PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.384_1s0025.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

Nin-like

Protein Properties

Length: 769aa MW: 80592 Da PI: 5.9755

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.384_1s0025.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	68.3	1.1e-21	338	384	3	49
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 k+++l++l+++F l +k+AA L vc+T+LKr+CR++GI+RWP+R++ Bobra.384_1s0025.1.p 338 KKLQLHELQAQFGLGLKEAAARLRVCPTTLKRACRRHGIQRWPRRQV 384 799******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MVLPDEDNRD EVEQDELKQR LTKVVTVLRD LPELQGQNGV STLCQVWLPD ISDDNEVVLR 60 TKGETFGVYG SACDLLAELR VVACHIDYTI DNESCLVGPP GHAFATGRAI FEPNLQKYGI 120 ENPKSPKGGS GTQVPCVHSV LVLPIFDTPD KKEAVAALEI VQNAKDMAFQ PIVKAITRLL 180 EDCSLYTSSE LTEADEMDGD KAALQAGDAV DARPVKKSEV KQEAEPHSSK PGTGQQSSTQ 240 TNWEEAGPDT QRRGPSAWKG GRSSARKAEP VSNGTGSGDD SGGSGKMSDG ESEDKDMGDA 300 EGNESPDKPA GKSGKGSGSQ GGGRVARRGT GTCGKPGKKL QLHELQAQFG LGLKEAAARL 360 RVCPTTLKRA CRRHGIQRWP RRQVLRDSGT DAALPTSTGV ANLTQPGGLS ARNLPQDIAL 420 ASILGANPTL DPTLMHRLSS WGAGGSLGLL GGLNGLEHFA GSRGFSDVTG STGVRLAEAL 480 SMRQAMDGAG GDPRSGGAKP LPGPSYDQMD ITGFGGDGSS PHSRGAGDDH GGSPALNNYG 540 LNAFASAGLL DQALRGLTPP SPSQRGGDMG DIHLQRMRLQ QHLQHALRKA NNQHSLRQLA 600 QANAFNRQLG GSLTDSVLAG TSNSNASLND LLQEAEALLK QPRRGPDPMM QQALDICHNQ 660 GPLKSNADYE HPLRMMQSLT GRRPGTGGGD TLPMSPTGLG ASGVDEQALL RAITLAHGGM 720 SRGLEPAAMF DPSILSIFAG AEGNTDFSGL GGETVLDPSL IRMLTNLG*

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MVLPDEDNRD EVEQDELKQR LTKVVTVLRD LPELQGQNGV STLCQVWLPD ISDDNEVVLR  60
TKGETFGVYG SACDLLAELR VVACHIDYTI DNESCLVGPP GHAFATGRAI FEPNLQKYGI  120
ENPKSPKGGS GTQVPCVHSV LVLPIFDTPD KKEAVAALEI VQNAKDMAFQ PIVKAITRLL  180
EDCSLYTSSE LTEADEMDGD KAALQAGDAV DARPVKKSEV KQEAEPHSSK PGTGQQSSTQ  240
TNWEEAGPDT QRRGPSAWKG GRSSARKAEP VSNGTGSGDD SGGSGKMSDG ESEDKDMGDA  300
EGNESPDKPA GKSGKGSGSQ GGGRVARRGT GTCGKPGKKL QLHELQAQFG LGLKEAAARL  360
RVCPTTLKRA CRRHGIQRWP RRQVLRDSGT DAALPTSTGV ANLTQPGGLS ARNLPQDIAL  420
ASILGANPTL DPTLMHRLSS WGAGGSLGLL GGLNGLEHFA GSRGFSDVTG STGVRLAEAL  480
SMRQAMDGAG GDPRSGGAKP LPGPSYDQMD ITGFGGDGSS PHSRGAGDDH GGSPALNNYG  540
LNAFASAGLL DQALRGLTPP SPSQRGGDMG DIHLQRMRLQ QHLQHALRKA NNQHSLRQLA  600
QANAFNRQLG GSLTDSVLAG TSNSNASLND LLQEAEALLK QPRRGPDPMM QQALDICHNQ  660
GPLKSNADYE HPLRMMQSLT GRRPGTGGGD TLPMSPTGLG ASGVDEQALL RAITLAHGGM  720
SRGLEPAAMF DPSILSIFAG AEGNTDFSGL GGETVLDPSL IRMLTNLG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	3e-11	Nin-like family protein