PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.27_2s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | MYB | ||||||||
Protein Properties | Length: 602aa MW: 65788.7 Da PI: 5.4855 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.8e-11 | 158 | 201 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT + de+l av+++G ++W+ +a+++g gR + +c rwq Bobra.27_2s0006.1.p 158 EWTVDQDERLQAAVEKHGLHQWDEVAKEVGGGRLETSCLMRWQR 201 7*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 36 | 1.6e-11 | 210 | 251 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W + Ed +l av+q+G + W+++a+++g Rt+ q +rw+ Bobra.27_2s0006.1.p 210 RVWLPSEDRRLRAAVQQHGRN-WTAVAACLG-ERTAQQAMHRWR 251 5799***************66.*********.***********8 PP | |||||||
3 | Myb_DNA-binding | 47.1 | 5.5e-15 | 260 | 305 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ l++av + G++ W+ +a ++ gRt+ +c++r+ ++l Bobra.27_2s0006.1.p 260 KGKWTDEEDQTLLQAVDEVGKK-WSVVALRVD-GRTDMSCRERYMNVL 305 79********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence |
MRRWARAGSR GANPNLMEDG LLQLGVVLLT PGGAQGAERV GQYLPYSFGS LRTPWSQQDD 60 SQLQEAVLHQ VRSTVVNSIL DKKSEGLGSV SQLVSLEQQL QEAVQSLEAD SAGVDEIVQA 120 FTQEQWAAIP TLAGLAKTGD ACRARWLFGL RRPPADEEWT VDQDERLQAA VEKHGLHQWD 180 EVAKEVGGGR LETSCLMRWQ RNFNPAICKR VWLPSEDRRL RAAVQQHGRN WTAVAACLGE 240 RTAQQAMHRW RFVVGAGIKK GKWTDEEDQT LLQAVDEVGK KWSVVALRVD GRTDMSCRER 300 YMNVLDPSLR KGPWSLEEDW RLQETVEAFK RIFPRISWAG VSRRLPGRTD SMCTEKISAQ 360 PGWQEAWDRE LAAAGQLQDL GDRPAPSHPQ VPGEEGGVLH EAPSSVQDPD IDTLPAQADM 420 ELQGGSPGVL TGQASLAGNP SQLLCEVPGV AARGTGGARG VPRAGVSGDD GTWLEREPHG 480 GPASTTGLGS RKRAPSRAPT ALDALAFAAE LVEDGRVVDE ETTKEVVEEE KHGDKGGEEV 540 GEAEGEEEKK DKAVVRKVRT KLTCPECGRW YRQGDLVRHK NSKGHKVALL DQGGYLLSVP 600 P* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-33 | MYB family protein |