PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.182_3s0112.2.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

SBP

Protein Properties

Length: 1272aa MW: 139582 Da PI: 5.4096

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.182_3s0112.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	99	4.2e-31	82	158	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C++ l+ keyh r+++Ce++ k ++vl +g+++rfCqqC+rfh+l++fD +krsCr rL++hn rrrk+ + Bobra.182_3s0112.2.p 82 CQVESCQTSLEGGKEYHVRYRICEKCLKLNEVLREGRKERFCQQCGRFHTLDQFDGDKRSCRARLQRHNTRRRKNPQ 158 **************************************************************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 1272 aa Download sequence
MSGLSFASNA YDYESQGDAN AKAWKRGDIS WDPFRMEADP VKAEKGAVAT RAAPTVNTRS 60 SNRAPREVAP GPPTRGKGPF KCQVESCQTS LEGGKEYHVR YRICEKCLKL NEVLREGRKE 120 RFCQQCGRFH TLDQFDGDKR SCRARLQRHN TRRRKNPQKS AVASKRGDKP AKAGKSTGVS 180 TKKMKVERPL PHDAFEEVLE NLLSTCEPSS LCPDFSGGST GSAQEYLQDG TSGLSTPMDD 240 TSMYTDDGPF HPALGDSDLT ESMSMNFMDH PSLSLPEQVY AFPTDQGTQD ILDSFPGMNL 300 VGSVPQFEQP RHTHHTTSLS QQPLGQHTLG LLPQDPLKVP LPDLPGFDDF ASLSEGAGPR 360 PASHQPGNHS ITGALHHLEQ LPKGYPGNGY LSLGTQPAGS ASVQADSYAI HWVPVHRELH 420 VQQQPSVVVG VPMQAPPSGS EYRYINSGLL QTNSKGTRQV AMLQPLNTLQ PSLVDVNNQP 480 MHVQLPHQLL PQQQLTQQQQ QLAQEQQHLN QRQQQLAQQQ QQLTQQRLAQ QQYLQQQQQQ 540 QRQQQHLAQP QAAQPAHAQQ TRSIASALDS LVLAKAIISN PLGVSPLGVY DSGLQHSRMS 600 TKLNGVTPSQ LPRDLKMQFQ SLLGADSMEA YIRPGCVHLI LKYSVAASEG HAQEGKLSAR 660 EAANWLLDQP QASTADIWHR GAILVQVHDE VALIREGKVT HVLDGQASAG VFPSLERVSP 720 LAVLNNSPDL LTLHGANLAH TDNIVLGYCQ GMEVYEKAVP KGQPAEALQL NLGSLTRNGA 780 VQLYVVRGCF QTRFKPVLMV DNPGVVEEIK QLEDAEVADS LDIDAFLLDL DSVLELIHSL 840 EADRSHSNEI LRPYSEDDMA TVFKTACRIF VYATTKGWPN VARMVAGLFD LLKKDISIII 900 ATMHACGKLY EWTLLHLAVL SRNPLMVDML LEWSSQFGCS FGAAIPGPKQ LTPMHLAVLL 960 KDGGAMVAKL TASCPDYEQA WKATTFDGLT AYQMAVKEGI QDVVREALRG VLAEKAAAQQ 1020 LSAEEECETD EESLSDYEVE DEFGIDPETG EVMDLDGICS DMPDDEEVEA PMIDSVQEAQ 1080 TEEEKAPAQE LYGRNSMPSV MAESSRGSFD ENVSCLKSSK DVFEIDDSFD SPFYGKRGKE 1140 EISRKDLCQA IGLTAPEFMD PPVKGDPKRL QALSEGQVVS TYGMGVAPTV FDRLSASRSA 1200 ILISSVGITT LFFAVLCGQF YEMMASGRDL SSITTVLMHL CHRYLLNCSD ILLHLNFCQS 1260 VRMDTLRSKS V*

Sequence ? help Back to Top

Protein Sequence Length: 1272 aa Download sequence

MSGLSFASNA YDYESQGDAN AKAWKRGDIS WDPFRMEADP VKAEKGAVAT RAAPTVNTRS  60
SNRAPREVAP GPPTRGKGPF KCQVESCQTS LEGGKEYHVR YRICEKCLKL NEVLREGRKE  120
RFCQQCGRFH TLDQFDGDKR SCRARLQRHN TRRRKNPQKS AVASKRGDKP AKAGKSTGVS  180
TKKMKVERPL PHDAFEEVLE NLLSTCEPSS LCPDFSGGST GSAQEYLQDG TSGLSTPMDD  240
TSMYTDDGPF HPALGDSDLT ESMSMNFMDH PSLSLPEQVY AFPTDQGTQD ILDSFPGMNL  300
VGSVPQFEQP RHTHHTTSLS QQPLGQHTLG LLPQDPLKVP LPDLPGFDDF ASLSEGAGPR  360
PASHQPGNHS ITGALHHLEQ LPKGYPGNGY LSLGTQPAGS ASVQADSYAI HWVPVHRELH  420
VQQQPSVVVG VPMQAPPSGS EYRYINSGLL QTNSKGTRQV AMLQPLNTLQ PSLVDVNNQP  480
MHVQLPHQLL PQQQLTQQQQ QLAQEQQHLN QRQQQLAQQQ QQLTQQRLAQ QQYLQQQQQQ  540
QRQQQHLAQP QAAQPAHAQQ TRSIASALDS LVLAKAIISN PLGVSPLGVY DSGLQHSRMS  600
TKLNGVTPSQ LPRDLKMQFQ SLLGADSMEA YIRPGCVHLI LKYSVAASEG HAQEGKLSAR  660
EAANWLLDQP QASTADIWHR GAILVQVHDE VALIREGKVT HVLDGQASAG VFPSLERVSP  720
LAVLNNSPDL LTLHGANLAH TDNIVLGYCQ GMEVYEKAVP KGQPAEALQL NLGSLTRNGA  780
VQLYVVRGCF QTRFKPVLMV DNPGVVEEIK QLEDAEVADS LDIDAFLLDL DSVLELIHSL  840
EADRSHSNEI LRPYSEDDMA TVFKTACRIF VYATTKGWPN VARMVAGLFD LLKKDISIII  900
ATMHACGKLY EWTLLHLAVL SRNPLMVDML LEWSSQFGCS FGAAIPGPKQ LTPMHLAVLL  960
KDGGAMVAKL TASCPDYEQA WKATTFDGLT AYQMAVKEGI QDVVREALRG VLAEKAAAQQ  1020
LSAEEECETD EESLSDYEVE DEFGIDPETG EVMDLDGICS DMPDDEEVEA PMIDSVQEAQ  1080
TEEEKAPAQE LYGRNSMPSV MAESSRGSFD ENVSCLKSSK DVFEIDDSFD SPFYGKRGKE  1140
EISRKDLCQA IGLTAPEFMD PPVKGDPKRL QALSEGQVVS TYGMGVAPTV FDRLSASRSA  1200
ILISSVGITT LFFAVLCGQF YEMMASGRDL SSITTVLMHL CHRYLLNCSD ILLHLNFCQS  1260
VRMDTLRSKS V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	185	RRRKNPQKSAVASKRGDKPAKAGKSTGVSTKKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	1e-23	SBP family protein