PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.182_3s0112.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | SBP | ||||||||
Protein Properties | Length: 1275aa MW: 139881 Da PI: 5.4096 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 98.9 | 4.2e-31 | 82 | 158 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C++ l+ keyh r+++Ce++ k ++vl +g+++rfCqqC+rfh+l++fD +krsCr rL++hn rrrk+ + Bobra.182_3s0112.1.p 82 CQVESCQTSLEGGKEYHVRYRICEKCLKLNEVLREGRKERFCQQCGRFHTLDQFDGDKRSCRARLQRHNTRRRKNPQ 158 **************************************************************************865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1275 aa Download sequence |
MSGLSFASNA YDYESQGDAN AKAWKRGDIS WDPFRMEADP VKAEKGAVAT RAAPTVNTRS 60 SNRAPREVAP GPPTRGKGPF KCQVESCQTS LEGGKEYHVR YRICEKCLKL NEVLREGRKE 120 RFCQQCGRFH TLDQFDGDKR SCRARLQRHN TRRRKNPQKS AVASKRGDKP AKAGKSTGVS 180 TKKMKVERPL PHDAFEEVLE NLLSTCEPSS LCPDFSGGST GSAQEYLQDG TSGLSTPMDD 240 TSMYTDDGPF HPALGDSDLT ESMSMNFMDH PSLSLPEQVY AFPTDQGTQD ILDSFPGMNL 300 VGSVPQFEQP RHTHHTTSLS QQPLGQHTLG LLPQDPLKVP LPDLPGFDDF ASLSEGAGPR 360 PASHQPGNHS ITGALHHLEQ LPKGYPGNGY LSLGTQPAGS ASVQADSYAI HWVPVHRELH 420 VQQQPSVVVG VPMQAPPSGS EYRYINSGLL QTNSKGTRQV AMLQPLNTLQ PSLVDVNNQP 480 MHVQLPHQLL PQQQLTQQQQ QLAQEQQHLN QRQQQLAQQQ QQLTQQRLAQ QQYLQQQQQQ 540 QRQQQHLAQP QAAQPAHAQQ TRSIASALDS LVLAKAIISN PLGVSPLGVY DSGLQHSRMS 600 TKLNGVTPSQ LPRDLKMQFQ SLLGADSMEA YIRPGCVHLI LKYSVAASEG HAQEGLQGKL 660 SAREAANWLL DQPQASTADI WHRGAILVQV HDEVALIREG KVTHVLDGQA SAGVFPSLER 720 VSPLAVLNNS PDLLTLHGAN LAHTDNIVLG YCQGMEVYEK AVPKGQPAEA LQLNLGSLTR 780 NGAVQLYVVR GCFQTRFKPV LMVDNPGVVE EIKQLEDAEV ADSLDIDAFL LDLDSVLELI 840 HSLEADRSHS NEILRPYSED DMATVFKTAC RIFVYATTKG WPNVARMVAG LFDLLKKDIS 900 IIIATMHACG KLYEWTLLHL AVLSRNPLMV DMLLEWSSQF GCSFGAAIPG PKQLTPMHLA 960 VLLKDGGAMV AKLTASCPDY EQAWKATTFD GLTAYQMAVK EGIQDVVREA LRGVLAEKAA 1020 AQQLSAEEEC ETDEESLSDY EVEDEFGIDP ETGEVMDLDG ICSDMPDDEE VEAPMIDSVQ 1080 EAQTEEEKAP AQELYGRNSM PSVMAESSRG SFDENVSCLK SSKDVFEIDD SFDSPFYGKR 1140 GKEEISRKDL CQAIGLTAPE FMDPPVKGDP KRLQALSEGQ VVSTYGMGVA PTVFDRLSAS 1200 RSAILISSVG ITTLFFAVLC GQFYEMMASG RDLSSITTVL MHLCHRYLLN CSDILLHLNF 1260 CQSVRMDTLR SKSV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 185 | RRRKNPQKSAVASKRGDKPAKAGKSTGVSTKKMK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.1 | 1e-23 | SBP family protein |