PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.152_3s0068.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | C3H | ||||||||
Protein Properties | Length: 392aa MW: 43552 Da PI: 7.8477 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.5e-06 | 236 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte C+ +++G C G +C++aH+ Bobra.152_3s0068.1.p 236 YKTEFCPEVLAGGGCDKGIQCQYAHD 261 9************************6 PP | |||||||
2 | zf-CCCH | 17.2 | 9.4e-06 | 286 | 306 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f+ t C G +C+FaHg Bobra.152_3s0068.1.p 286 CEHFMTTNSCASGLTCSFAHG 306 ********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence |
MEECGFCRDS IAPSSDSHVS VTCSSCGDTK WHRRCTCNHA KALNSAKNPK NRQTEENAMN 60 DPEQLIKNQR CPRTIRAKRC KGKVTHLSYE HPKWRRGGPQ ADQNGPGWKP CPADHWEFLS 120 GQLADFAAEK GLAAQDFHTK LCARIKQTGE VCPDKSCIDA HSVRELRLHQ AMQMKHVPHG 180 YKAIFCDSPS EMECSKGLHC PNAHEAGEWN LRKAIDNEEK SFRNWGDDTP PLNEEYKTEF 240 CPEVLAGGGC DKGIQCQYAH DSEEFRKYAA ARRGRVDEFN FKIQFCEHFM TTNSCASGLT 300 CSFAHGAGDM RWPAAVARKK VVLDASGNYK SQFCNSPDCS DPVGCAKYHT QADKLEPGAL 360 SYTCAPSWRS VGTAGSIERL HLALSPIPPR I* |