PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.150_2s0090.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C3H

Protein Properties

Length: 609aa MW: 66349.2 Da PI: 6.845

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.150_2s0090.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.8e-07	105	129	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt +C +f + G C +G++Ck++H+ Bobra.150_2s0090.1.p 105 PKTQICFDFTK-GVCARGASCKYSHD 129 79*******.***********7 PP
2	zf-CCCH	21.1	5.6e-07	222	243	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C +f r G C +G++C+++H+ Bobra.150_2s0090.1.p 222 EICYDFTR-GRCARGSNCRYSHD 243 79****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MMPYEEMPGL QSVPTLSGMG RENKENEFAL HSLEQAEQME ALFRDFTAKR TEPAEAAMEA 60 ARVAYNISAS SASRPAFLPA IDAGQSQPAN QLDPKAFVSN ERVDPKTQIC FDFTKGVCAR 120 GASCKYSHDL DLIVRVNSQE RGVCFDFLRG QCQRGQLCRF SHDISNITAQ QGQWASKGKR 180 NAPICYDFVK GQCLRAAECR YSHDITSIIN STKGVHNSSS NEICYDFTRG RCARGSNCRY 240 SHDMSKSLNQ FYFWYQQLAQ RIPSAAAQCQ AMFGQAGFGV RRRGHSDPGE ETLHAAASAF 300 ASQMKASPLL VVAPQPETNN AMNSGFGMSA AELHPVVSGT ATPQYEYVAP QLPQPQWRKP 360 TEMESSMESE NYHGGPRRHT HDGSMDEYNC YHYNDIMQQM LSMQITKTNV ETIPEWTTAP 420 VSNNIPYTSL ANPVAVSVAP PKQAATPPVP YQAEAVMYSQ SMSAADPHGH QGPAGQSSDL 480 LQNIRSLQDV AQLKQALEIK TAELRTAALA AAGSVAPSAQ ALCSEETNPG SKAYDHMLPM 540 KDMAYIRVNA DARSSSIGAN LEAYHPNAQT TSATVSTAPM TGLSTFRSIW DNGCTSNLGG 600 QRNLPRGS*

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MMPYEEMPGL QSVPTLSGMG RENKENEFAL HSLEQAEQME ALFRDFTAKR TEPAEAAMEA  60
ARVAYNISAS SASRPAFLPA IDAGQSQPAN QLDPKAFVSN ERVDPKTQIC FDFTKGVCAR  120
GASCKYSHDL DLIVRVNSQE RGVCFDFLRG QCQRGQLCRF SHDISNITAQ QGQWASKGKR  180
NAPICYDFVK GQCLRAAECR YSHDITSIIN STKGVHNSSS NEICYDFTRG RCARGSNCRY  240
SHDMSKSLNQ FYFWYQQLAQ RIPSAAAQCQ AMFGQAGFGV RRRGHSDPGE ETLHAAASAF  300
ASQMKASPLL VVAPQPETNN AMNSGFGMSA AELHPVVSGT ATPQYEYVAP QLPQPQWRKP  360
TEMESSMESE NYHGGPRRHT HDGSMDEYNC YHYNDIMQQM LSMQITKTNV ETIPEWTTAP  420
VSNNIPYTSL ANPVAVSVAP PKQAATPPVP YQAEAVMYSQ SMSAADPHGH QGPAGQSSDL  480
LQNIRSLQDV AQLKQALEIK TAELRTAALA AAGSVAPSAQ ALCSEETNPG SKAYDHMLPM  540
KDMAYIRVNA DARSSSIGAN LEAYHPNAQT TSATVSTAPM TGLSTFRSIW DNGCTSNLGG  600
QRNLPRGS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	3e-07	C3H family protein