PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.114_2s0030.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

SBP

Protein Properties

Length: 1040aa MW: 113421 Da PI: 4.8141

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.114_2s0030.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	96.5	2.5e-30	87	165	1	78
--SSTT-----TT.--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlse.akeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv +C+adl+ k+yh r+++Ce + k+p v+ +g+++rfCqqC+rfh ++ fD +krsCr+rL++hn+rrrk+++ Bobra.114_2s0030.1.p 87 RCQVLECSADLTVgHKDYHARYRICERCLKCPCVVRAGVRERFCQQCGRFHPVEAFDGDKRSCRDRLQRHNARRRKTKP 165 6********96269**********************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence
MLDRLAKTEG MCPPSSFLDM NGNVGQSVGM PEYHYTQAWD QVEWDFQPFN FIATRMDPAK 60 AALVGEIERV RSASTTVNQA ALKTGPRCQV LECSADLTVG HKDYHARYRI CERCLKCPCV 120 VRAGVRERFC QQCGRFHPVE AFDGDKRSCR DRLQRHNARR RKTKPAGEGS TSTLLQFQSM 180 APAPSLPPVV EASLPAPGTQ DMPPFKKPHI TPALPGVSQA VRLNWVPAPR PDPLLESGLP 240 DILEPKEKSV KDSFSPYSVL SPPTETSGAS TIFDEGIMDT ALSLNSDLGA LGGNNMIFNF 300 AALGSQPDLM PQGVEMSKLE YKAYNFQVAT PDHSEFGLLS DHMSYGIQGD GRLSPVHRSL 360 SGIMDETMFS LDQSAAIKQE PGMRSNVDAA MHSFKEANHL VNLSMGYEPV HVRQRMSTKM 420 MDCTPEQLPL ELKMQLMTLL QCGQNDLDAY IRPGCVHLTV NMSLDQNCGQ HVSNLSARAA 480 ANNLLQGTGA EFWASRTLLV QLNNEVALVK GGKVLRVLDG YASQGVYPTI DRIAPLCVST 540 KGPASVKLFG INLRSSNNVM IARCQGLHAT LKPEEPFVDD VVDAEDDDEE EVTEEVTVKL 600 PSPRRNGAMQ IEMIHGGYMS SCKSVLVLDN DEAVDEINSI TPELCTAIGL DLESFMTDLD 660 NLLELQNALA ASSRDRDRLR KYSAADYQRL AIIGRRIFVL CLSQGWPALA RLVLPVAVMG 720 QKSVEKTIEE MHTISRGLSL LHLAVRSQNP KMVKMLLEWS SANGCEWSAA MPGPGGVTPM 780 HMAAILKDGG ELAALLTVLC MDGKAAWGVK VNGLTPFDMA KIAGTAEAVQ KQLTSAITAI 840 HKAQEDAYLA TLEQMKDDEE GEYEDDEEEY EIDPETGEII NLDQFQGMKT ARHPDPEPIP 900 EWGPPPKELP VVKRGPLPEP NPAQASSSTS NDSAASFIKA TKHEMRSEGG SGSSSSAPMA 960 DMDDDEDSME AWKQGDATKQ TNMYRPDPLY GDNICMVDVN GNMIVPTVFD RMSASCSGLL 1020 ITLIGGATLA ARYSFDCLA*

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence

MLDRLAKTEG MCPPSSFLDM NGNVGQSVGM PEYHYTQAWD QVEWDFQPFN FIATRMDPAK  60
AALVGEIERV RSASTTVNQA ALKTGPRCQV LECSADLTVG HKDYHARYRI CERCLKCPCV  120
VRAGVRERFC QQCGRFHPVE AFDGDKRSCR DRLQRHNARR RKTKPAGEGS TSTLLQFQSM  180
APAPSLPPVV EASLPAPGTQ DMPPFKKPHI TPALPGVSQA VRLNWVPAPR PDPLLESGLP  240
DILEPKEKSV KDSFSPYSVL SPPTETSGAS TIFDEGIMDT ALSLNSDLGA LGGNNMIFNF  300
AALGSQPDLM PQGVEMSKLE YKAYNFQVAT PDHSEFGLLS DHMSYGIQGD GRLSPVHRSL  360
SGIMDETMFS LDQSAAIKQE PGMRSNVDAA MHSFKEANHL VNLSMGYEPV HVRQRMSTKM  420
MDCTPEQLPL ELKMQLMTLL QCGQNDLDAY IRPGCVHLTV NMSLDQNCGQ HVSNLSARAA  480
ANNLLQGTGA EFWASRTLLV QLNNEVALVK GGKVLRVLDG YASQGVYPTI DRIAPLCVST  540
KGPASVKLFG INLRSSNNVM IARCQGLHAT LKPEEPFVDD VVDAEDDDEE EVTEEVTVKL  600
PSPRRNGAMQ IEMIHGGYMS SCKSVLVLDN DEAVDEINSI TPELCTAIGL DLESFMTDLD  660
NLLELQNALA ASSRDRDRLR KYSAADYQRL AIIGRRIFVL CLSQGWPALA RLVLPVAVMG  720
QKSVEKTIEE MHTISRGLSL LHLAVRSQNP KMVKMLLEWS SANGCEWSAA MPGPGGVTPM  780
HMAAILKDGG ELAALLTVLC MDGKAAWGVK VNGLTPFDMA KIAGTAEAVQ KQLTSAITAI  840
HKAQEDAYLA TLEQMKDDEE GEYEDDEEEY EIDPETGEII NLDQFQGMKT ARHPDPEPIP  900
EWGPPPKELP VVKRGPLPEP NPAQASSSTS NDSAASFIKA TKHEMRSEGG SGSSSSAPMA  960
DMDDDEDSME AWKQGDATKQ TNMYRPDPLY GDNICMVDVN GNMIVPTVFD RMSASCSGLL  1020
ITLIGGATLA ARYSFDCLA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	RRRKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	1e-24	SBP family protein