PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Bobra.114_1s0010.1.p

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

Protein Properties

Length: 197aa MW: 21178.2 Da PI: 8.01

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.114_1s0010.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.7	7e-12	26	50	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++CrtlL YP GA +VRCa C ++ Bobra.114_1s0010.1.p 26 CQNCRTLLVYPQGAQNVRCARCRHI 50 **********************997 PP
2	zf-LSD1	26.2	1.4e-08	65	89	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Cr++L + rGA V+C C+++ Bobra.114_1s0010.1.p 65 CDHCRAVLIFLRGAAQVQCGACHHI 89 ***********************97 PP
3	zf-LSD1	30.2	7.6e-10	103	127	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C ++L+Y GA sV+Ca+C++V Bobra.114_1s0010.1.p 103 CGCCNITLMYAHGAQSVKCAVCQHV 127 9***********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MSHIHPYYVP PRQAPFVHEP QSQVVCQNCR TLLVYPQGAQ NVRCARCRHI TARPTEGGDT 60 AQLVCDHCRA VLIFLRGAAQ VQCGACHHIN DAAQANRVGH LVCGCCNITL MYAHGAQSVK 120 CAVCQHVTEV TSSNMFRHGH HGADSPTVPS EPLTQTVVIE NPPSMDEHGN QVQNIVVGVV 180 SAGGVRKQPN MKAVPP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-37	LSD family protein