PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.110_2s0050.2.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 442aa MW: 48165.2 Da PI: 9.5623

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.110_2s0050.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.4	3.3e-13	14	54	7	48
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +Ed+ ++++v +G ++W++Ia++++ gR +kqc++rw+++l Bobra.110_2s0050.2.p 14 QEDDEIIRLVGVHGARQWSRIAAELP-GRIGKQCRERWHNHL 54 79**********************.***********97 PP
2	Myb_DNA-binding	50.1	6.4e-16	62	104	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEde+l++ ++++G+ W++ a +++ gRt++++k+rw++ Bobra.110_2s0050.2.p 62 EWTAEEDEILIERHNEFGNS-WALLATYLP-GRTDNNIKNRWNST 104 7***************99.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MWDIRKTLIV LLVQEDDEII RLVGVHGARQ WSRIAAELPG RIGKQCRERW HNHLDPSIKH 60 SEWTAEEDEI LIERHNEFGN SWALLATYLP GRTDNNIKNR WNSTLKRRVE AGLAEDGSLN 120 YRLTTSRRAS CQAYHEQEDP PPSPKVNQLW KPLPRRGGLT MPPRLVASPR SPAERNLLSH 180 DSGGSHQYDL PVFGYGTPEP LPSLSSDAVS NVPVASGRKS ARKPSRVERA PMSASPTKVP 240 SLCVTSPRNP QNSSKRRSGI SGGKRPRREL LPGPTKTGSG SKSLRKASNA AQSPVCVIAV 300 SRGVSGSRPH LFSDLPSCMT DARVRVTFES PQADKPLANE ETSTTEALGG YELSMSTPMK 360 DGDDDEKSLR REPCAATPQL LYAHSSGHHL DSNGRNCGIG CSPLDGRGCG MQISPLEGHP 420 AHLHSLSSPL LASTGGPYLL R*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MWDIRKTLIV LLVQEDDEII RLVGVHGARQ WSRIAAELPG RIGKQCRERW HNHLDPSIKH  60
SEWTAEEDEI LIERHNEFGN SWALLATYLP GRTDNNIKNR WNSTLKRRVE AGLAEDGSLN  120
YRLTTSRRAS CQAYHEQEDP PPSPKVNQLW KPLPRRGGLT MPPRLVASPR SPAERNLLSH  180
DSGGSHQYDL PVFGYGTPEP LPSLSSDAVS NVPVASGRKS ARKPSRVERA PMSASPTKVP  240
SLCVTSPRNP QNSSKRRSGI SGGKRPRREL LPGPTKTGSG SKSLRKASNA AQSPVCVIAV  300
SRGVSGSRPH LFSDLPSCMT DARVRVTFES PQADKPLANE ETSTTEALGG YELSMSTPMK  360
DGDDDEKSLR REPCAATPQL LYAHSSGHHL DSNGRNCGIG CSPLDGRGCG MQISPLEGHP  420
AHLHSLSSPL LASTGGPYLL R*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	3e-36	MYB family protein