PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.110_2s0050.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 511aa MW: 56058.9 Da PI: 9.7183

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.110_2s0050.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.9e-18	25	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd+ l +av+++Gg++Wk+Ia++++ Rt+ qc +rwqk+l Bobra.110_2s0050.1.p 25 KGGWTREEDKELEQAVREYGGKQWKKIAERFP-FRTDVQCLHRWQKVL 71 688***************************.**********986 PP
2	Myb_DNA-binding	49	1.4e-15	77	123	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++ Ed+ ++++v +G ++W++Ia++++ gR +kqc++rw+++l Bobra.110_2s0050.1.p 77 KGGWSKKEDDEIIRLVGVHGARQWSRIAAELP-GRIGKQCRERWHNHL 123 688***************************.***********97 PP
3	Myb_DNA-binding	49.8	7.8e-16	131	173	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEde+l++ ++++G+ W++ a +++ gRt++++k+rw++ Bobra.110_2s0050.1.p 131 EWTAEEDEILIERHNEFGNS-WALLATYLP-GRTDNNIKNRWNST 173 7***************99.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MVSEWDSSSE NICRSAGGPA RRSAKGGWTR EEDKELEQAV REYGGKQWKK IAERFPFRTD 60 VQCLHRWQKV LNPELVKGGW SKKEDDEIIR LVGVHGARQW SRIAAELPGR IGKQCRERWH 120 NHLDPSIKHS EWTAEEDEIL IERHNEFGNS WALLATYLPG RTDNNIKNRW NSTLKRRVEA 180 GLAEDGSLNY RLTTSRRASC QAYHEQEDPP PSPKVNQLWK PLPRRGGLTM PPRLVASPRS 240 PAERNLLSHD SGGSHQYDLP VFGYGTPEPL PSLSSDAVSN VPVASGRKSA RKPSRVERAP 300 MSASPTKVPS LCVTSPRNPQ NSSKRRSGIS GGKRPRRELL PGPTKTGSGS KSLRKASNAA 360 QSPVCVIAVS RGVSGSRPHL FSDLPSCMTD ARVRVTFESP QADKPLANEE TSTTEALGGY 420 ELSMSTPMKD GDDDEKSLRR EPCAATPQLL YAHSSGHHLD SNGRNCGIGC SPLDGRGCGM 480 QISPLEGHPA HLHSLSSPLL ASTGGPYLLR *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MVSEWDSSSE NICRSAGGPA RRSAKGGWTR EEDKELEQAV REYGGKQWKK IAERFPFRTD  60
VQCLHRWQKV LNPELVKGGW SKKEDDEIIR LVGVHGARQW SRIAAELPGR IGKQCRERWH  120
NHLDPSIKHS EWTAEEDEIL IERHNEFGNS WALLATYLPG RTDNNIKNRW NSTLKRRVEA  180
GLAEDGSLNY RLTTSRRASC QAYHEQEDPP PSPKVNQLWK PLPRRGGLTM PPRLVASPRS  240
PAERNLLSHD SGGSHQYDLP VFGYGTPEPL PSLSSDAVSN VPVASGRKSA RKPSRVERAP  300
MSASPTKVPS LCVTSPRNPQ NSSKRRSGIS GGKRPRRELL PGPTKTGSGS KSLRKASNAA  360
QSPVCVIAVS RGVSGSRPHL FSDLPSCMTD ARVRVTFESP QADKPLANEE TSTTEALGGY  420
ELSMSTPMKD GDDDEKSLRR EPCAATPQLL YAHSSGHHLD SNGRNCGIGC SPLDGRGCGM  480
QISPLEGHPA HLHSLSSPLL ASTGGPYLLR *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	9e-72	MYB family protein