PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.101_2s0115.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | Nin-like | ||||||||
Protein Properties | Length: 613aa MW: 64560.3 Da PI: 9.1149 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 55.2 | 1.4e-17 | 48 | 89 | 10 | 51 |
RWP-RK 10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 l+ +F +++k+AA L vc+T+LKr CR++GI+ WP+R +++ Bobra.101_2s0115.3.p 48 LQPHFPKKLKEAAAALSVCPTTLKRNCRRLGINKWPQRAVTK 89 899***********************************9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence |
MSDLCQKTAS HMPLSPGTPG FGLFHLLVSQ SLGVLTMRQS NANFCAFLQP HFPKKLKEAA 60 AALSVCPTTL KRNCRRLGIN KWPQRAVTKA IDRAILQRQL SGSSRRSSPT VHGGPGGSSG 120 KGGGLERAGS QTTATLSVND PRAGNLPQFN AQPLDLDLVQ ERMSAVGAGP PAVGEGVGEA 180 RLSSPIRQQH GTSSQFPDLR NALLMQGPSN PQFQNMPWKL STPQQHAVGP ASGPQSREVP 240 GEGGHEVVPF MVGMNGAMPV LLHIPSGAQQ SLHSSEGMQH MPVIFLQPPP IIVQSAPHVH 300 HEHMGPPPVQ PKPQQHAQGR SSVSPVNPPP TSYPGGALEI PQVLPKQGMS GPDAVALLPQ 360 PFNPLQVPQA HRPAQQSPQQ MDKSPLKPSR AQGAVSYPEG SPQSLALGSM SPQMGSWGQP 420 AQEMPSPQDA PKPQRQYSWI CKCEYPDPLI GLQIPREPPL AEGLRQFLQR DSLQRSRSNP 480 VAFLRSLDGG PQCLSPRPVP QEASTGPSLE GWGLLDSISG ILKGSDVGGP HPALPQFPGQ 540 PSGHSSFGIV AQGGGSSEMA YPGMLCRSPS ATHHDKSAAA PVDARGLGAL PKSASADFLD 600 AMLQDQGLLD LA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 6e-10 | Nin-like family protein |