PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.101_2s0115.2.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

Nin-like

Protein Properties

Length: 642aa MW: 67783.5 Da PI: 8.5792

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.101_2s0115.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	61.3	1.8e-19	70	118	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + ++++dl+ +F +++k+AA L vc+T+LKr CR++GI+ WP+R +++ Bobra.101_2s0115.2.p 70 NPLTFKDLEPHFPKKLKEAAAALSVCPTTLKRNCRRLGINKWPQRAVTK 118 5699*****************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MDCGEQGYLF EDIFSTEPDA RSQDSASSKG DSGCDLERQN SGASPLVLHN EKHGKARHGT 60 GKRKAVVLKN PLTFKDLEPH FPKKLKEAAA ALSVCPTTLK RNCRRLGINK WPQRAVTKAI 120 DRAILQRQLS GSSRRSSPTV HGGPGGSSGK GGGLERAGSQ TTATLSVNDP RAGNLPQFNA 180 QPLDLDLVQE RMSAVGAGPP AVGEGVGEAR LSSPIRQQHG TSSQFPDLRN ALLMQGPSNP 240 QFQNMPWKLS TPQQHAVGPA SGPQSREVPG EGGHEVVPFM VGMNGAMPVL LHIPSGAQQS 300 LHSSEGMQHM PVIFLQPPPI IVQSAPHVHH EHMGPPPVQP KPQQHAQGRS SVSPVNPPPT 360 SYPGGALEIP QVLPKQGMSG PDAVALLPQP FNPLQVPQAH RPAQQSPQQM DKSPLKPSRA 420 QGAVSYPEGS PQSLALGSMS PQMGSWGQPA QEMPSPQDAP KPQRQYSWIC KCEYPDPLIG 480 LQIPREPPLA EGLRQFLQRD SLQRSRSNPV AFLRSLDGGP QCLSPRPVPQ EASTGPSLEG 540 WGLLDSISGI LKGSDVGGPH PALPQFPGQP SGHSSFGIVA QGGGSSEMAY PGMLCRSPSA 600 THHDKSAAAP VDARGLGALP KSASADFLDA MLQDQGLLDL A*

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MDCGEQGYLF EDIFSTEPDA RSQDSASSKG DSGCDLERQN SGASPLVLHN EKHGKARHGT  60
GKRKAVVLKN PLTFKDLEPH FPKKLKEAAA ALSVCPTTLK RNCRRLGINK WPQRAVTKAI  120
DRAILQRQLS GSSRRSSPTV HGGPGGSSGK GGGLERAGSQ TTATLSVNDP RAGNLPQFNA  180
QPLDLDLVQE RMSAVGAGPP AVGEGVGEAR LSSPIRQQHG TSSQFPDLRN ALLMQGPSNP  240
QFQNMPWKLS TPQQHAVGPA SGPQSREVPG EGGHEVVPFM VGMNGAMPVL LHIPSGAQQS  300
LHSSEGMQHM PVIFLQPPPI IVQSAPHVHH EHMGPPPVQP KPQQHAQGRS SVSPVNPPPT  360
SYPGGALEIP QVLPKQGMSG PDAVALLPQP FNPLQVPQAH RPAQQSPQQM DKSPLKPSRA  420
QGAVSYPEGS PQSLALGSMS PQMGSWGQPA QEMPSPQDAP KPQRQYSWIC KCEYPDPLIG  480
LQIPREPPLA EGLRQFLQRD SLQRSRSNPV AFLRSLDGGP QCLSPRPVPQ EASTGPSLEG  540
WGLLDSISGI LKGSDVGGPH PALPQFPGQP SGHSSFGIVA QGGGSSEMAY PGMLCRSPSA  600
THHDKSAAAP VDARGLGALP KSASADFLDA MLQDQGLLDL A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	4e-10	Nin-like family protein