PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0734s0001.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

Nin-like

Protein Properties

Length: 635aa MW: 67418 Da PI: 7.2975

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0734s0001.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.8	1.1e-18	72	118	5	51
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++ +dl+ +F + +k+AA L vc+T+LKr CR++GI+ WP+R +++ Bobra.0734s0001.1.p 72 LTYQDLEPHFPKRLKEAAAALSVCPTTLKRNCRRLGINKWPQRAMTK 118 7899***************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MDYWESSYLF EDIWSTIPVA PSQDSASSKG DSGCDLERQN SGASTLVQHN EKSGKGRHGT 60 GKRKAVVIKS LLTYQDLEPH FPKRLKEAAA ALSVCPTTLK RNCRRLGINK WPQRAMTKAI 120 DHDIRQKQLS GSSRRSSATV HCGPGESSEI GVRGGGLQRA GSQATATLSV NDPRAGNLPR 180 FNAQPLDLDL VQERMSAVGA APPAVGACVG DALLPSSRQE DGRSSHLPGL RNALLMQGPS 240 SPQFQSMPWG LSTPAQRTVG PTSGPKSREV PREGVQEVVP FMVGMNGAMP VLLHIPSGAQ 300 QSLHSPGGFQ PMPVIFFQPP PFILQSSPRM HQDPMGPPPL QPKPQQHTQG PSPLDPVDPP 360 STPYTGGAPK QGMSGPDAVP PTPQPITPLR FFQSYSPAQQ SPQQMDTSPL KLSSAQGAVS 420 YPDGSPQSLP SGSVSPQMGS WGQAAQEMPS PQNPPPPQRQ YSWICLCEYP DPLTGLQIPG 480 EPPLAERRRQ IPQLDSLQRS RSNPVPFRRS LDGGRQGPSA RPVPQEASAG TSLGVLLDSI 540 SGILKGDDIE APVSALPQFP GQPSEDSGLG MFAQGGMSSE IEYPGIFCRP PGATLHDTSA 600 AAPVETWGFG VLPRSASADF LDAMMQDQGL LDLA*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MDYWESSYLF EDIWSTIPVA PSQDSASSKG DSGCDLERQN SGASTLVQHN EKSGKGRHGT  60
GKRKAVVIKS LLTYQDLEPH FPKRLKEAAA ALSVCPTTLK RNCRRLGINK WPQRAMTKAI  120
DHDIRQKQLS GSSRRSSATV HCGPGESSEI GVRGGGLQRA GSQATATLSV NDPRAGNLPR  180
FNAQPLDLDL VQERMSAVGA APPAVGACVG DALLPSSRQE DGRSSHLPGL RNALLMQGPS  240
SPQFQSMPWG LSTPAQRTVG PTSGPKSREV PREGVQEVVP FMVGMNGAMP VLLHIPSGAQ  300
QSLHSPGGFQ PMPVIFFQPP PFILQSSPRM HQDPMGPPPL QPKPQQHTQG PSPLDPVDPP  360
STPYTGGAPK QGMSGPDAVP PTPQPITPLR FFQSYSPAQQ SPQQMDTSPL KLSSAQGAVS  420
YPDGSPQSLP SGSVSPQMGS WGQAAQEMPS PQNPPPPQRQ YSWICLCEYP DPLTGLQIPG  480
EPPLAERRRQ IPQLDSLQRS RSNPVPFRRS LDGGRQGPSA RPVPQEASAG TSLGVLLDSI  540
SGILKGDDIE APVSALPQFP GQPSEDSGLG MFAQGGMSSE IEYPGIFCRP PGATLHDTSA  600
AAPVETWGFG VLPRSASADF LDAMMQDQGL LDLA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	2e-10	Nin-like family protein