PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0491s0005.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

SBP

Protein Properties

Length: 1041aa MW: 108366 Da PI: 4.9053

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0491s0005.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	99	4e-31	137	214	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegCe +l+++ yhrr+++Ce+h k v + +g++qrfCqqC+r h+l+ f+ +krsCr+rL++hn+rrrkk++ Bobra.0491s0005.1.p 137 ICQVEGCERELASLSPYHRRYRICEMHFKLDVFVRDGRRQRFCQQCGRCHDLNAFEGSKRSCRNRLNQHNARRRKKNP 214 5**************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1041 aa Download sequence
MAQRTASDWQ AEEGVAALGT QETGNRGEGE AETRDAPGND AEATDALLSL AAPRGTLDPA 60 TAETWKYRLT PPQRPTRPTA TSVATGSIQR PSSDAMATTA EETPEQAGQP ALEEQPAPTT 120 MQGRRGPYRR STLDHMICQV EGCERELASL SPYHRRYRIC EMHFKLDVFV RDGRRQRFCQ 180 QCGRCHDLNA FEGSKRSCRN RLNQHNARRR KKNPAGQQGN GAQQGDKIEG GQYVGGKRGG 240 GEMNSGSKRR ATAEAAAFPT WGLGSGGASA FTPQGGARTA QVGKSGASAF GPPGRVDGDP 300 TRRGQSSEAS EGGLGQDDGG LDPGLAAPGM TGHPGTLGAN DSPSGAGVAA MYPGMMAAGM 360 SPGSNPLAAQ IPLAGFPPGA LGAHAGLWHP AAGLPGLPSN DPAALALQAD MMSAQMAALG 420 GHLGASMGIP PNAQHTQTVQ MLQAQLLRYQ YMLHAMVSGS WPGAAGNTAQ LGLEGLGFPP 480 MSAGLLGMPP GDPMLLGLGQ LPGMGAISEV PADGEQQPAT SGPPTGDLAA FAPGGSAEGV 540 TDGTAATSVS PAGLLEGAVV QGEVVNPGDE SNSVPNATMT PSTTAPTWRP KEEDPNLPEG 600 EIPQAGPGTF AAPHAIDGQV ATPGIGEVGA GLHSGVAALD PAAQILAPPP LGVDPSGIEG 660 SEVKLEEQAA PVMTPDPGVA LGEAIPPLPV AAGMEYAGQA DVERVAVKVY GRTPENMSDE 720 ERQKFTEWIS TAPVMTDATT KAGCVHMTWR AFLAPHDAGN LRENGARAFV EYLISHPDKQ 780 LSEQSVLLYI GGKSAFCRGG QLMWESELSL IPTVRDLRTS EDILAPVLPT DLPCISASYV 840 NGMFAAVIAQ VPGTLSLELK GSGLHCEGLH VFCHDGSSVL NSTVTPPIRH CCELNANHTS 900 LHDSSSLMVD LDGLPSVGLC WLEAERGPYI GATYPLLVLP PGCESAAIEL GLVLQVINNK 960 QGQQQQQQQQ ELKHDFGASV LPWSSWAPSA RGLVSDFGLL LRTMPLDKRP VWWESVRGKL 1020 LGFATDYALD AVAEMMMCWR *

Sequence ? help Back to Top

Protein Sequence Length: 1041 aa Download sequence

MAQRTASDWQ AEEGVAALGT QETGNRGEGE AETRDAPGND AEATDALLSL AAPRGTLDPA  60
TAETWKYRLT PPQRPTRPTA TSVATGSIQR PSSDAMATTA EETPEQAGQP ALEEQPAPTT  120
MQGRRGPYRR STLDHMICQV EGCERELASL SPYHRRYRIC EMHFKLDVFV RDGRRQRFCQ  180
QCGRCHDLNA FEGSKRSCRN RLNQHNARRR KKNPAGQQGN GAQQGDKIEG GQYVGGKRGG  240
GEMNSGSKRR ATAEAAAFPT WGLGSGGASA FTPQGGARTA QVGKSGASAF GPPGRVDGDP  300
TRRGQSSEAS EGGLGQDDGG LDPGLAAPGM TGHPGTLGAN DSPSGAGVAA MYPGMMAAGM  360
SPGSNPLAAQ IPLAGFPPGA LGAHAGLWHP AAGLPGLPSN DPAALALQAD MMSAQMAALG  420
GHLGASMGIP PNAQHTQTVQ MLQAQLLRYQ YMLHAMVSGS WPGAAGNTAQ LGLEGLGFPP  480
MSAGLLGMPP GDPMLLGLGQ LPGMGAISEV PADGEQQPAT SGPPTGDLAA FAPGGSAEGV  540
TDGTAATSVS PAGLLEGAVV QGEVVNPGDE SNSVPNATMT PSTTAPTWRP KEEDPNLPEG  600
EIPQAGPGTF AAPHAIDGQV ATPGIGEVGA GLHSGVAALD PAAQILAPPP LGVDPSGIEG  660
SEVKLEEQAA PVMTPDPGVA LGEAIPPLPV AAGMEYAGQA DVERVAVKVY GRTPENMSDE  720
ERQKFTEWIS TAPVMTDATT KAGCVHMTWR AFLAPHDAGN LRENGARAFV EYLISHPDKQ  780
LSEQSVLLYI GGKSAFCRGG QLMWESELSL IPTVRDLRTS EDILAPVLPT DLPCISASYV  840
NGMFAAVIAQ VPGTLSLELK GSGLHCEGLH VFCHDGSSVL NSTVTPPIRH CCELNANHTS  900
LHDSSSLMVD LDGLPSVGLC WLEAERGPYI GATYPLLVLP PGCESAAIEL GLVLQVINNK  960
QGQQQQQQQQ ELKHDFGASV LPWSSWAPSA RGLVSDFGLL LRTMPLDKRP VWWESVRGKL  1020
LGFATDYALD AVAEMMMCWR *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	241	GGKRGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-16	SBP family protein