PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bobra.0389s0015.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 26107.9 Da PI: 8.6501 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.7e-07 | 31 | 46 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 r G C yGd+Ck++Hg Bobra.0389s0015.4.p 31 TR-GACTYGDSCKYSHG 46 55.*************9 PP | |||||||
2 | zf-CCCH | 41.4 | 2.4e-13 | 112 | 138 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt lC +f+ tG C+yG +Ck+aHgp Bobra.0389s0015.4.p 112 FKTQLCTRFMNTGDCPYGLSCKYAHGP 138 69***********************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence |
MPPICAKHDL LEPMCPRCST AFVLGSSFRW TRGACTYGDS CKYSHGDQPD GQFGGGDDGG 60 NRRQGNFGKR RGGERYDRDG PSRRGGQEHR EKHGMFNSMD DADRGPNRGL LFKTQLCTRF 120 MNTGDCPYGL SCKYAHGPEE MRQAPGQQMG MGPGNPMHMD MGPMGPLGGA LLGGLGGNDG 180 GPNGHDAHGL AKPGTGHGQP GFGDAKSGHG NAKPGYGNAE SGPPSRGATA TSRSPSRSPT 240 RQSPATCSL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68200.1 | 6e-06 | C3H family protein |