PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0389s0015.3.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family C3H
Protein Properties Length: 247aa    MW: 25873.4 Da    PI: 9.3068
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0389s0015.3.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-082343526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          Cr + r G C yGd+Ck++Hg
  Bobra.0389s0015.3.p 23 VCRMWTR-GACTYGDSCKYSHG 43
                         6999999.*************9 PP
2zf-CCCH41.42.3e-13109135127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt lC +f+ tG C+yG +Ck+aHgp
  Bobra.0389s0015.3.p 109 FKTQLCTRFMNTGDCPYGLSCKYAHGP 135
                          69***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MDADIRHSRS FHGNRLSGGN KQVCRMWTRG ACTYGDSCKY SHGDQPDGQF GGGDDGGNRR  60
QGNFGKRRGG ERYDRDGPSR RGGQEHREKH GMFNSMDDAD RGPNRGLLFK TQLCTRFMNT  120
GDCPYGLSCK YAHGPEEMRQ APGQQMGMGP GNPMHMDMGP MGPLGGALLG GLGGNDGGPN  180
GHDAHGLAKP GTGHGQPGFG DAKSGHGNAK PGYGNAESGP PSRGATATSR SPSRSPTRQS  240
PATCSL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-06C3H family protein