PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0389s0015.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | C3H | ||||||||
Protein Properties | Length: 247aa MW: 25873.4 Da PI: 9.3068 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 6e-08 | 23 | 43 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr + r G C yGd+Ck++Hg Bobra.0389s0015.2.p 23 VCRMWTR-GACTYGDSCKYSHG 43 6999999.*************9 PP | |||||||
2 | zf-CCCH | 41.4 | 2.3e-13 | 109 | 135 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt lC +f+ tG C+yG +Ck+aHgp Bobra.0389s0015.2.p 109 FKTQLCTRFMNTGDCPYGLSCKYAHGP 135 69***********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MDADIRHSRS FHGNRLSGGN KQVCRMWTRG ACTYGDSCKY SHGDQPDGQF GGGDDGGNRR 60 QGNFGKRRGG ERYDRDGPSR RGGQEHREKH GMFNSMDDAD RGPNRGLLFK TQLCTRFMNT 120 GDCPYGLSCK YAHGPEEMRQ APGQQMGMGP GNPMHMDMGP MGPLGGALLG GLGGNDGGPN 180 GHDAHGLAKP GTGHGQPGFG DAKSGHGNAK PGYGNAESGP PSRGATATSR SPSRSPTRQS 240 PATCSL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 5e-06 | C3H family protein |