PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0389s0015.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family C3H
Protein Properties Length: 310aa    MW: 32770.3 Da    PI: 9.6843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0389s0015.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.1e-0886106526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           Cr + r G C yGd+Ck++Hg
  Bobra.0389s0015.1.p  86 VCRMWTR-GACTYGDSCKYSHG 106
                          6999999.*************9 PP
2zf-CCCH413.2e-13172198127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt lC +f+ tG C+yG +Ck+aHgp
  Bobra.0389s0015.1.p 172 FKTQLCTRFMNTGDCPYGLSCKYAHGP 198
                          69***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MRCYIGRNTF GTRAATASLS KARLGFHCST ASVTLNIRSI VDGRTMEAFS NLIDNLFTLC  60
RSPMDADIRH SRSFHGNRLS GGNKQVCRMW TRGACTYGDS CKYSHGDQPD GQFGGGDDGG  120
NRRQGNFGKR RGGERYDRDG PSRRGGQEHR EKHGMFNSMD DADRGPNRGL LFKTQLCTRF  180
MNTGDCPYGL SCKYAHGPEE MRQAPGQQMG MGPGNPMHMD MGPMGPLGGA LLGGLGGNDG  240
GPNGHDAHGL AKPGTGHGQP GFGDAKSGHG NAKPGYGNAE SGPPSRGATA TSRSPSRSPT  300
RQSPATCSL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-06C3H family protein