PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0385s0003.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family C3H
Protein Properties Length: 279aa    MW: 30868.6 Da    PI: 7.881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0385s0003.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-081134327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         + +C ++++ G+C+ G+ C+F+Hgp
  Bobra.0385s0003.1.p 11 ETPCVYHHK-GYCRNGSECQFSHGP 34
                         579******.*************96 PP
2zf-CCCH283.8e-094975127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ykte+Crf+     C +Gd+C++aHgp
  Bobra.0385s0003.1.p 49 YKTEPCRFYGTIRGCGRGDQCTYAHGP 75
                         9************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MDTMKQRRPS ETPCVYHHKG YCRNGSECQF SHGPRPWPGS PPPDITPRYK TEPCRFYGTI  60
RGCGRGDQCT YAHGPSELRS PSERSARHTS TDSSPGSLHA TGNGILYRGS PAQACPEFKA  120
GSNVLSPAQS LRRQEVFAQL SSGTASAAHN CLPVRRDEEA SAKFGKYNEI CTLLQELITF  180
VDADVEGESC FQCPINFERF KNPVVAADGH TYELDSIKEW MKKSSLSPST LEKLENTSVI  240
PNWALRRAME AQESYNKAIS SKLVQLAMKF TMDDHVVN*