PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0281s0007.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family C3H
Protein Properties Length: 328aa    MW: 34101.9 Da    PI: 7.8067
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0281s0007.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08115136426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + Crf+ + G C yG++C+F H+
  Bobra.0281s0007.1.p 115 PVCRFWPQ-GRCTYGANCRFQHP 136
                          78******.*************8 PP
2zf-CCCH18.24.5e-06153171625
                          -SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                          Cr+f + G C+yGd+C+F H
  Bobra.0281s0007.1.p 153 CRYFPQ-GRCHYGDQCRFKH 171
                          **9999.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MDATQRQSFL DLEIYQQLAS AISANPGYFQ NSVVDGSAYS NGPIPSHYLL SQESMNRNLQ  60
HSRGSLDLDE VLKGSAGWDE AKSLMPQTGS LPAYISNALS TVGQANFPTM NSSKPVCRFW  120
PQGRCTYGAN CRFQHPAGMR GPQAPAQSNV SHCRYFPQGR CHYGDQCRFK HESPPGRGLL  180
ALSGSGTTST SVGGARNSLT GAGPASLLHP ALSDPLLSSS TLQQRLGLGG GSPMAGSSLL  240
CNTLGSGLGS RGLDLLAATR GTSDLENAQR NGYLGFPSPG AGGDILLGNG IAVAADDGDY  300
HFSGQQQMLK QVASLNGLNG GNGSLSY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.15e-07C3H family protein