PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0276s0006.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

NF-X1

Protein Properties

Length: 895aa MW: 97127.6 Da PI: 8.1186

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0276s0006.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.8	3.6e-06	184	202	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCppCp+ Bobra.0276s0006.1.p 184 CG-HNCLLLCHPGPCPPCPL 202 .*************95 PP
2	zf-NF-X1	18.3	5.1e-06	237	254	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C CH G+CppC+ Bobra.0276s0006.1.p 237 CG-HRCPLRCHSGDCPPCS 254 .*************8 PP
3	zf-NF-X1	22.2	2.9e-07	289	308	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC++ CH G C+ Cp+ Bobra.0276s0006.1.p 289 CGRHKCERVCHSGACGDCPL 308 ******************95 PP
4	zf-NF-X1	17.3	1e-05	423	442	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C ++CH+G C pCp+ Bobra.0276s0006.1.p 423 CGNHLCPAPCHPGRCLPCPL 442 ******************95 PP
5	zf-NF-X1	21.1	6.8e-07	644	662	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG HkCq CH+GpCppC++ Bobra.0276s0006.1.p 644 CG-HKCQLACHPGPCPPCQE 662 .*************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence
MAMIDNKNLA WRQNQQPQNE ADMQAILFEP YVLAYGGTSW EPEEAEAIQR VKEYITSSES 60 SASVCLICLE TMGNADAVWH CHESCHCLFH LLCIQAWGRQ QLQAAQLRAD ATAAITASQG 120 PAFESRPVPE VVWGCPKCRC EYNAGQLPTE YRCMCGKEVN PPLNPWLLPH TCGESCGRPL 180 RSACGHNCLL LCHPGPCPPC PLQVDMACYC GKKVERRRCR GGTSWSCGCL CGRRMECGHR 240 CPLRCHSGDC PPCSLAGKHV CECGSEERTV ACSQRVFQCG RVCGKELPCG RHKCERVCHS 300 GACGDCPLSA ARTCPCGKVT YSALKCDELA APCGGTCGKT LACGLHMCEE RCHAGPCTSN 360 CRAMITKTCV CGKTSKTVPC AETLRCDKKC TQMRNCGRHA CKRRCCEGSC PPCEAVCGRK 420 LPCGNHLCPA PCHPGRCLPC PLTAECSCAC GATRYALPCG SESRALPPRC RHTCPVPRTC 480 RHAAHLPPHG CHFGACPACP YPCGSSLACG HGCSEAQCHD PPATAIAGFA VPAPPVSANF 540 ASARKAAASL PRLPPAQLVA EEVRSRSENL TECPPCRVAV PVTCLGAHMT QQLPCSSARV 600 FSCGAACGRL LACGNHSCQK ACHSLPPDGE CERCERMCER EWECGHKCQL ACHPGPCPPC 660 QEAVTCGCFC ARSSLTVTCC LLREAAGTAK EALLLRCDKK CHKALPWCPH VCQAQCHAGP 720 CQEAADCREE VVVRCACRRQ KAKWMCCDVR RELSARGGKA EYDASTALRL LACNADCAST 780 RESKARAGNS QGLQLDKDVA RADMQLLASE QTSAVSHEPV EKRRPRTREE RRQRELERES 840 EQAKARRNQI WRERITAGKK MLRKLGIFVL LVCFVCLFLR LVWPSPQQKR PVPA*

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence

MAMIDNKNLA WRQNQQPQNE ADMQAILFEP YVLAYGGTSW EPEEAEAIQR VKEYITSSES  60
SASVCLICLE TMGNADAVWH CHESCHCLFH LLCIQAWGRQ QLQAAQLRAD ATAAITASQG  120
PAFESRPVPE VVWGCPKCRC EYNAGQLPTE YRCMCGKEVN PPLNPWLLPH TCGESCGRPL  180
RSACGHNCLL LCHPGPCPPC PLQVDMACYC GKKVERRRCR GGTSWSCGCL CGRRMECGHR  240
CPLRCHSGDC PPCSLAGKHV CECGSEERTV ACSQRVFQCG RVCGKELPCG RHKCERVCHS  300
GACGDCPLSA ARTCPCGKVT YSALKCDELA APCGGTCGKT LACGLHMCEE RCHAGPCTSN  360
CRAMITKTCV CGKTSKTVPC AETLRCDKKC TQMRNCGRHA CKRRCCEGSC PPCEAVCGRK  420
LPCGNHLCPA PCHPGRCLPC PLTAECSCAC GATRYALPCG SESRALPPRC RHTCPVPRTC  480
RHAAHLPPHG CHFGACPACP YPCGSSLACG HGCSEAQCHD PPATAIAGFA VPAPPVSANF  540
ASARKAAASL PRLPPAQLVA EEVRSRSENL TECPPCRVAV PVTCLGAHMT QQLPCSSARV  600
FSCGAACGRL LACGNHSCQK ACHSLPPDGE CERCERMCER EWECGHKCQL ACHPGPCPPC  660
QEAVTCGCFC ARSSLTVTCC LLREAAGTAK EALLLRCDKK CHKALPWCPH VCQAQCHAGP  720
CQEAADCREE VVVRCACRRQ KAKWMCCDVR RELSARGGKA EYDASTALRL LACNADCAST  780
RESKARAGNS QGLQLDKDVA RADMQLLASE QTSAVSHEPV EKRRPRTREE RRQRELERES  840
EQAKARRNQI WRERITAGKK MLRKLGIFVL LVCFVCLFLR LVWPSPQQKR PVPA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	1e-147	NF-X1 family protein