PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0260s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | LSD | ||||||||
Protein Properties | Length: 189aa MW: 19898 Da PI: 8.0011 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 31.8 | 2.3e-10 | 21 | 45 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C ++L +P GA++VRCa C ++ Bobra.0260s0010.1.p 21 CSSCNIMLKFPQGASNVRCAKCGHI 45 **********************997 PP | |||||||
2 | zf-LSD1 | 38.6 | 1.8e-12 | 61 | 86 | 2 | 25 |
zf-LSD1 2 g..gCrtlLsYPrGApsVRCalCdtV 25 + +Cr +L+YPrGA V+C+lC+t+ Bobra.0260s0010.1.p 61 SgqNCRMVLMYPRGAQQVQCSLCHTM 86 5458********************96 PP | |||||||
3 | zf-LSD1 | 32.2 | 1.7e-10 | 100 | 122 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C +Crt+L+Y GA+ V+Ca+C+ Bobra.0260s0010.1.p 100 CDSCRTMLMYAHGASTVKCAVCN 122 **********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MQPYGQLQTS QPEGPTSTLV CSSCNIMLKF PQGASNVRCA KCGHINKTAP GGDMMAQLVC 60 SGQNCRMVLM YPRGAQQVQC SLCHTMNDPQ LIQAIGYLHC DSCRTMLMYA HGASTVKCAV 120 CNYLTAVKPG SLPGPQIGYD TTMMSATGTA GTVPMMASYS TADMSGLPTV SPMRNSMDHS 180 SGTLPPVQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-30 | LSD family protein |