PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0226s0029.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 608aa MW: 65653.9 Da PI: 9.5873

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0226s0029.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.6e-16	31	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r W++eEd +l ++v ++G+ +W+ Ia+ +g R +k+c++rw++ Bobra.0226s0029.1.p 31 RSTWSPEEDARLMELVSKHGPCNWSVIAEQLGgkPVRNGKSCRLRWFNQ 79 789*****************************88********996 PP
2	Myb_DNA-binding	45.3	2e-14	86	130	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + ++T+eE+ ++ +k+lG++ W++Ia+ ++ gRt++ +k++w+ + Bobra.0226s0029.1.p 86 KEPFTAEEERTIAVKHKELGNR-WAAIAKFLP-GRTDNAIKNYWNGH 130 679*****************.*****.*********966 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MSAGEESDPS GRVCDDEELD FSFCDSKQAR RSTWSPEEDA RLMELVSKHG PCNWSVIAEQ 60 LGGKPVRNGK SCRLRWFNQL NPKLKKEPFT AEEERTIAVK HKELGNRWAA IAKFLPGRTD 120 NAIKNYWNGH LKRKVLGHQK NQEKLHTARM KALMEASTSS ERRTGATGVR CSDSYSERTA 180 GSEGAEFPHL GNSPLKGAHS HMSNQTSYSS ILLGMNEQVK MQHQTLRNVE FAEHLNLPGG 240 AVAQVFHMDS ASATNSQTLQ NLLNSFSLGP ATMSQSSQNN LLLQSILGNS VAPQVPLPAY 300 QATLAGLGAL QTAAPLANSG LQAFQTLTPE QQELVVLRGL ESLKKGSTVP NMTLAELQLL 360 RDEEIMRQRI QRMVAHQLSQ EQKLIQEQKL IVKQQEERTA LEAFARMQGT NPTLTEHQLL 420 LSNLGALPGG TALSGGMLKV PALGASLQAG SLPTFKPNPA RSLVEPASPE HPVGDRRPVQ 480 RFDSTVISQH SQSHTSRSSP DHSVERGSPG NHDQARKGTG FASPQGFRPV LGPASWPRTV 540 QSASAVGPAV TAPRDSDLGA LHRPHARPGT LGDLGSLGFR GPASAPPREA PSGMQLSLQG 600 QLQETGG*

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MSAGEESDPS GRVCDDEELD FSFCDSKQAR RSTWSPEEDA RLMELVSKHG PCNWSVIAEQ  60
LGGKPVRNGK SCRLRWFNQL NPKLKKEPFT AEEERTIAVK HKELGNRWAA IAKFLPGRTD  120
NAIKNYWNGH LKRKVLGHQK NQEKLHTARM KALMEASTSS ERRTGATGVR CSDSYSERTA  180
GSEGAEFPHL GNSPLKGAHS HMSNQTSYSS ILLGMNEQVK MQHQTLRNVE FAEHLNLPGG  240
AVAQVFHMDS ASATNSQTLQ NLLNSFSLGP ATMSQSSQNN LLLQSILGNS VAPQVPLPAY  300
QATLAGLGAL QTAAPLANSG LQAFQTLTPE QQELVVLRGL ESLKKGSTVP NMTLAELQLL  360
RDEEIMRQRI QRMVAHQLSQ EQKLIQEQKL IVKQQEERTA LEAFARMQGT NPTLTEHQLL  420
LSNLGALPGG TALSGGMLKV PALGASLQAG SLPTFKPNPA RSLVEPASPE HPVGDRRPVQ  480
RFDSTVISQH SQSHTSRSSP DHSVERGSPG NHDQARKGTG FASPQGFRPV LGPASWPRTV  540
QSASAVGPAV TAPRDSDLGA LHRPHARPGT LGDLGSLGFR GPASAPPREA PSGMQLSLQG  600
QLQETGG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-37	MYB family protein