PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0217s0047.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | NF-YC | ||||||||
Protein Properties | Length: 219aa MW: 23224.4 Da PI: 4.7442 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 124.3 | 4.7e-39 | 39 | 141 | 1 | 96 |
NF-YC 1 qlksfwekqieka.......tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ql+ fw + +e++ t+fk ++lPl+rikki+k+de v+misaeaP llska e+fi el+lr+w hae nkrrtl+k+di++av Bobra.0217s0047.2.p 39 QLEEFWLNALEEVqkigpgsTEFKTQQLPLTRIKKIMKSDEAVRMISAEAPLLLSKASEIFIHELSLRAWSHAELNKRRTLQKNDIESAV 128 6889999886653222222279******************************************************************** PP NF-YC 84 trtdifdflvdiv 96 ++ d fdflvdi+ Bobra.0217s0047.2.p 129 QSHDAFDFLVDII 141 ***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MAFPYGATAG AYLPGANSAQ IASSQMQAHL EQQAKLKQQL EEFWLNALEE VQKIGPGSTE 60 FKTQQLPLTR IKKIMKSDEA VRMISAEAPL LLSKASEIFI HELSLRAWSH AELNKRRTLQ 120 KNDIESAVQS HDAFDFLVDI IGYPTAAAEQ AGVALHPVLP GLTYALPSGG GPIPFEAPVL 180 GVPTALDPLA PVPALMGSEP PGVGSTGEVN EDGQTTFG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-41 | NF-YC family protein |