PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0217s0047.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family NF-YC
Protein Properties Length: 219aa    MW: 23224.4 Da    PI: 4.7442
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0217s0047.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC124.34.7e-3939141196
                NF-YC   1 qlksfwekqieka.......tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                          ql+ fw + +e++       t+fk ++lPl+rikki+k+de v+misaeaP llska e+fi el+lr+w hae nkrrtl+k+di++av
  Bobra.0217s0047.1.p  39 QLEEFWLNALEEVqkigpgsTEFKTQQLPLTRIKKIMKSDEAVRMISAEAPLLLSKASEIFIHELSLRAWSHAELNKRRTLQKNDIESAV 128
                          6889999886653222222279******************************************************************** PP

                NF-YC  84 trtdifdflvdiv 96 
                          ++ d fdflvdi+
  Bobra.0217s0047.1.p 129 QSHDAFDFLVDII 141
                          ***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MAFPYGATAG AYLPGANSAQ IASSQMQAHL EQQAKLKQQL EEFWLNALEE VQKIGPGSTE  60
FKTQQLPLTR IKKIMKSDEA VRMISAEAPL LLSKASEIFI HELSLRAWSH AELNKRRTLQ  120
KNDIESAVQS HDAFDFLVDI IGYPTAAAEQ AGVALHPVLP GLTYALPSGG GPIPFEAPVL  180
GVPTALDPLA PVPALMGSEP PGVGSTGEVN EDGQTTFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.12e-41NF-YC family protein