PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bobra.0217s0045.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 210aa MW: 23142.8 Da PI: 4.7571 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 149.2 | 8.6e-47 | 26 | 131 | 1 | 99 |
NF-YC 1 qlksfwekq.......iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ql++fw++q + ++fkn++lPl+rikki+k+dedv+misaeaP l+ska e+fileltlr+w hae+nkrrtl+k+di++a+ Bobra.0217s0045.3.p 26 QLRQFWQTQmsdiqktSTDPAEFKNQNLPLTRIKKIMKSDEDVRMISAEAPLLFSKASEIFILELTLRAWSHAESNKRRTLQKNDIDSAI 115 89*******5553222223358******************************************************************** PP NF-YC 84 trtdifdflvdivprd 99 t+tdifdflvdiv +d Bobra.0217s0045.3.p 116 TNTDIFDFLVDIVTTD 131 *************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence |
MASHYSTPHG GYAAPPMEHT TQIDSQLRQF WQTQMSDIQK TSTDPAEFKN QNLPLTRIKK 60 IMKSDEDVRM ISAEAPLLFS KASEIFILEL TLRAWSHAES NKRRTLQKND IDSAITNTDI 120 FDFLVDIVTT DNPAGAPGVE GAPNGAREAF QYPGQMPTMA TMQSMNDMSG MPGAHLRHDP 180 QHVEYGYAMP DGSLQIKVDV QDGDGNGTE* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 103 | 109 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54830.3 | 1e-48 | NF-YC family protein |