PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0195s0111.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

CPP

Protein Properties

Length: 723aa MW: 78121.6 Da PI: 8.8013

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0195s0111.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	41.9	1.9e-13	445	481	4	41
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+CnCkkskClk+YC+Cfaag++C+ C+C++C+N+++ Bobra.0195s0111.1.p 445 KRCNCKKSKCLKLYCDCFAAGQFCGC-CTCQNCQNSSQ 481 89*********************9.******976 PP
2	TCR	49.1	1.2e-15	514	552	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++gCnCkks+C+kkYCeC++ag+ C+ +CkC C+N+ Bobra.0195s0111.1.p 514 HRRGCNCKKSNCKKKYCECYQAGVNCGPQCKCVACHNTP 552 689**********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MQRTPERPLA GDRLQKLGGV HGECPTPTTS KEVLSPLSTP LCPASGEDCS LYQACDGYPS 60 HLQTPRLRAG ISTTGGQMSD PRAAHLRDRS PGMQFSPDYL PPLYTPQASA RPGARQFPAQ 120 DPSPDVRLWH DSPKFSQSCH VANLPDIRDP PLQKEVFPDQ SKGETNNPSQ QTIPESVPCG 180 IRPAASLEQQ RLSAEAQGRI PRDLDEYPEN FADHHLGSTT VDQRVRHDYQ LARAKEAALP 240 ESGTRNNDFS NAVDARLSGA AAGAAFLPNG NVKVQPSEEA GVVLMGPLWR GPGEIGLAPS 300 VAATPSARGG HDRDGCVSAT PPMTESSEPL QMTRESSART RHPASTHVEL LEKVHTHERS 360 YLKQLLSSHG DGARDSPIRE AIPKLKGSAD HSSIIPAQDF TPPGTTLSQS VIPPATPGDD 420 KSALVASFSY PPSRQNAATA GRWAKRCNCK KSKCLKLYCD CFAAGQFCGC CTCQNCQNSS 480 QYKELVDSTR TSIEQRNPQA FSEKISKITH SAIHRRGCNC KKSNCKKKYC ECYQAGVNCG 540 PQCKCVACHN TPSDGMPPAF NGDAYRSRGS KARGQLAPYT SAPGTPAASR GVPVGNATTT 600 AHSPRVPRIS ARNKAKREAT SSDQPSPGLL SDDATPSSKA ADLQSFISNT YQKEVEAAAS 660 QSFPSMCQLK SLPLKRGPKE TVHLKNTRKM QEQFSTKAWY LPKQICSRCW LRTNTRISIQ 720 HL*

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MQRTPERPLA GDRLQKLGGV HGECPTPTTS KEVLSPLSTP LCPASGEDCS LYQACDGYPS  60
HLQTPRLRAG ISTTGGQMSD PRAAHLRDRS PGMQFSPDYL PPLYTPQASA RPGARQFPAQ  120
DPSPDVRLWH DSPKFSQSCH VANLPDIRDP PLQKEVFPDQ SKGETNNPSQ QTIPESVPCG  180
IRPAASLEQQ RLSAEAQGRI PRDLDEYPEN FADHHLGSTT VDQRVRHDYQ LARAKEAALP  240
ESGTRNNDFS NAVDARLSGA AAGAAFLPNG NVKVQPSEEA GVVLMGPLWR GPGEIGLAPS  300
VAATPSARGG HDRDGCVSAT PPMTESSEPL QMTRESSART RHPASTHVEL LEKVHTHERS  360
YLKQLLSSHG DGARDSPIRE AIPKLKGSAD HSSIIPAQDF TPPGTTLSQS VIPPATPGDD  420
KSALVASFSY PPSRQNAATA GRWAKRCNCK KSKCLKLYCD CFAAGQFCGC CTCQNCQNSS  480
QYKELVDSTR TSIEQRNPQA FSEKISKITH SAIHRRGCNC KKSNCKKKYC ECYQAGVNCG  540
PQCKCVACHN TPSDGMPPAF NGDAYRSRGS KARGQLAPYT SAPGTPAASR GVPVGNATTT  600
AHSPRVPRIS ARNKAKREAT SSDQPSPGLL SDDATPSSKA ADLQSFISNT YQKEVEAAAS  660
QSFPSMCQLK SLPLKRGPKE TVHLKNTRKM QEQFSTKAWY LPKQICSRCW LRTNTRISIQ  720
HL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-15	CPP family protein