PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0187s0077.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 532aa MW: 59792.7 Da PI: 9.0786

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0187s0077.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	310	351	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+e+ ++lv +v++ G + W+ I + +g R ++ c++r++ Bobra.0187s0077.1.p 310 GKWTEEDTQRLVTLVAERGRR-WAEIGAALG--RMPELCRDRYRY 351 79***************99.****8..********85 PP
2	Myb_DNA-binding	28.9	2.7e-09	361	424	2	45
SSS-HHHHHHHHHHHHHTTTT.....................-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....................tWktIartmgkgRtlkqcksrwq 45 g+W++eE+ +l + v+ + + +W+ +a m +R + qc+ +w+ Bobra.0187s0077.1.p 361 GKWSEEEERRLREIVNTHLNLvktcqeaegirgptwvqldgiDWEFVADVME-TRNEVQCRKKWY 424 89***************99***************************.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MGKKTRAQEI DKGMTKENSL SCAAVTACLS SKRKVADPSF QQEGVSSKLH KGPKQTTGRI 60 QSNVPPLLAE ELVTAHRTPR KRKGARKEDL TAEPEAIAAL LQMSMMRGQQ GSQALAEDHN 120 GPTVPISVSH ATLASENSPD KEQLTEAGPS KEQGAQQEAE RGAAKRRKRK TSRIHEMQVG 180 LSEVSLRPAN AEAAGQADTC HENLERPSCS TPVQPENLGM PEISWRATLG AVRKRRGRYS 240 EAEETTIMNA LKEYARCHNF SESDLSWAVK TQRSKAKGAW LEVARALPHR SARSIYGHGI 300 RLIHEGNKLG KWTEEDTQRL VTLVAERGRR WAEIGAALGR MPELCRDRYR YIKLGNKRKT 360 GKWSEEEERR LREIVNTHLN LVKTCQEAEG IRGPTWVQLD GIDWEFVADV METRNEVQCR 420 KKWYLQLSES MVERGLWGRG DDRRMLKALY ESNALYDFEV DWANLVPGRG EMETRRRWTL 480 MLKCVPKWQN MEFCDILDFL RALTTPKASE GVEPSSDNIG AEIENEAPSV A*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MGKKTRAQEI DKGMTKENSL SCAAVTACLS SKRKVADPSF QQEGVSSKLH KGPKQTTGRI  60
QSNVPPLLAE ELVTAHRTPR KRKGARKEDL TAEPEAIAAL LQMSMMRGQQ GSQALAEDHN  120
GPTVPISVSH ATLASENSPD KEQLTEAGPS KEQGAQQEAE RGAAKRRKRK TSRIHEMQVG  180
LSEVSLRPAN AEAAGQADTC HENLERPSCS TPVQPENLGM PEISWRATLG AVRKRRGRYS  240
EAEETTIMNA LKEYARCHNF SESDLSWAVK TQRSKAKGAW LEVARALPHR SARSIYGHGI  300
RLIHEGNKLG KWTEEDTQRL VTLVAERGRR WAEIGAALGR MPELCRDRYR YIKLGNKRKT  360
GKWSEEEERR LREIVNTHLN LVKTCQEAEG IRGPTWVQLD GIDWEFVADV METRNEVQCR  420
KKWYLQLSES MVERGLWGRG DDRRMLKALY ESNALYDFEV DWANLVPGRG EMETRRRWTL  480
MLKCVPKWQN MEFCDILDFL RALTTPKASE GVEPSSDNIG AEIENEAPSV A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	8e-36	MYB_related family protein