PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0185s0047.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family C3H
Protein Properties Length: 312aa    MW: 34891.5 Da    PI: 6.1255
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0185s0047.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06134159126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykte C+  +++G C  G +C++aH 
  Bobra.0185s0047.1.p 134 YKTEFCPEVLAGGGCDKGIQCQYAHN 159
                          9************************6 PP
2zf-CCCH17.57.1e-06184204626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C +f+ t  C  G +C+FaHg
  Bobra.0185s0047.1.p 184 CEHFMTTNSCASGLTCSFAHG 204
                          ********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MLSDRWKPCP ADHWEFLSGQ LADFAVYKGL APQDFHTKLC TRIKQTGEVC PKKSCIDAHS  60
VRELRLKLAM QMNHVPPDYK AIFCVSSSEM ECSKGLHCPN AHEAGEWNLR KAIDREEKSF  120
QNRGDDTTAL NEEYKTEFCP EVLAGGGCDK GIQCQYAHNS EEFRKYAAAR RGRVDEFNFK  180
IQFCEHFMTT NSCASGLTCS FAHGAGDMRW PAAVARKKVV FDASGNYKSQ FCNSPDCSDP  240
VGCAKYHTQA DKLEPGALSK LYMCPELEEC GDCWFDREAT PCPFAHSAAD LEVMDQVKQL  300
LQKLEPPAEP T*