PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0179s0051.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C3H

Protein Properties

Length: 929aa MW: 99229.7 Da PI: 6.1653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0179s0051.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	64	86	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t lC +a G C+yG+rCkF+H+ Bobra.0179s0051.1.p 64 TDLCFSYAV-GSCHYGERCKFSHD 86 789999999.*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 929 aa Download sequence
MSFNRRGKTA QQLIEDGIAP VKAEHWREAG RRVLVQAITS NAEPAENKKS KRQIKKERKE 60 KAATDLCFSY AVGSCHYGER CKFSHDVAAY VAARPPDLPG SCPNSCLPSC PFGITCRWAS 120 SHTRPDDLTK QFLIRTAATE APGPDPVASG TAPLNFPGGG TVPGDPTVQE TADASRSAAS 180 VVVPGSTAGG NNAAGLTVGE GVLPLPDEES GLLAVEGARG SADLNSNGCR LNGNVSPQQD 240 SSPDGSGLHG RRSVAFLQPQ QDTRAVVNQL DKSVQGRLRR GCYDFSKASA VLAGMGVKSG 300 KNQQSMPAVQ QKGCEPSSAK GATHGPEQQV IPPERHPDQA TGGAAGLAGV PGPPANGERP 360 EQAPADWLPD LDRGGSSPAH EEACRRQDGS SCDPEGPKAK RIRADAGVIL PSAPETHRPG 420 NEGGRTVSAA GNGLLPGDRN GDLQMAETEI AVSGRDEDLP MAEAGSLVEP KEIAPPVANG 480 FAKEDGVLLT AESQSGAPFG IEDVLMTETG IGTTGKTLAE PGMANGSAVT PESCSGMKLF 540 DLEANANVDV EVRVRAAEHR KVDFREKLYL APLTTVGNLP FRRVCKRLGA DITCGEMAMA 600 TNLLQGQASE WALLKRHPCE EIFGVQVCGG YVDAMTKCAQ LLEDQTDVDF VDINFGCPID 660 CVTRRNAGSA CLTRPNRIEA IARGMSSVLS CDLTMKVRKG FNDGADIVHT WLPRAPSWGV 720 SAVVLHGRTR QQRYTKLADW QYIKATSESC PGLQLIGNGD VLSQQEYYER LEECPRLATA 780 MIARAALIKP WIFTEIKERR DWDISAGERF DLLKLFCSSG LMHWGSDARG VETTRRFLLE 840 WLSFLHRYVP VGLLEIVPQK MNWRPPPFVG RSDLETLLGS DNAADWVRIS EMLLGPAPHG 900 FVFAPKHKSS SYAASEAGMA HEAEQENG*

Sequence ? help Back to Top

Protein Sequence Length: 929 aa Download sequence

MSFNRRGKTA QQLIEDGIAP VKAEHWREAG RRVLVQAITS NAEPAENKKS KRQIKKERKE  60
KAATDLCFSY AVGSCHYGER CKFSHDVAAY VAARPPDLPG SCPNSCLPSC PFGITCRWAS  120
SHTRPDDLTK QFLIRTAATE APGPDPVASG TAPLNFPGGG TVPGDPTVQE TADASRSAAS  180
VVVPGSTAGG NNAAGLTVGE GVLPLPDEES GLLAVEGARG SADLNSNGCR LNGNVSPQQD  240
SSPDGSGLHG RRSVAFLQPQ QDTRAVVNQL DKSVQGRLRR GCYDFSKASA VLAGMGVKSG  300
KNQQSMPAVQ QKGCEPSSAK GATHGPEQQV IPPERHPDQA TGGAAGLAGV PGPPANGERP  360
EQAPADWLPD LDRGGSSPAH EEACRRQDGS SCDPEGPKAK RIRADAGVIL PSAPETHRPG  420
NEGGRTVSAA GNGLLPGDRN GDLQMAETEI AVSGRDEDLP MAEAGSLVEP KEIAPPVANG  480
FAKEDGVLLT AESQSGAPFG IEDVLMTETG IGTTGKTLAE PGMANGSAVT PESCSGMKLF  540
DLEANANVDV EVRVRAAEHR KVDFREKLYL APLTTVGNLP FRRVCKRLGA DITCGEMAMA  600
TNLLQGQASE WALLKRHPCE EIFGVQVCGG YVDAMTKCAQ LLEDQTDVDF VDINFGCPID  660
CVTRRNAGSA CLTRPNRIEA IARGMSSVLS CDLTMKVRKG FNDGADIVHT WLPRAPSWGV  720
SAVVLHGRTR QQRYTKLADW QYIKATSESC PGLQLIGNGD VLSQQEYYER LEECPRLATA  780
MIARAALIKP WIFTEIKERR DWDISAGERF DLLKLFCSSG LMHWGSDARG VETTRRFLLE  840
WLSFLHRYVP VGLLEIVPQK MNWRPPPFVG RSDLETLLGS DNAADWVRIS EMLLGPAPHG  900
FVFAPKHKSS SYAASEAGMA HEAEQENG*