PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0169s0109.2.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

Nin-like

Protein Properties

Length: 685aa MW: 72855.1 Da PI: 5.1313

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0169s0109.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.2	5.8e-22	411	459	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 k+++ edl+++F +k+AA+ Lg+c+T+LKr+CR++GI+RWP+R + + Bobra.0169s0109.2.p 411 KKLKYEDLRSQFGVGLKEAASRLGICPTTLKRACRRHGIQRWPRRTLLK 459 7899*****************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MGGLEGMAST KLHLGSLEAP SFLAHGPAFS NQLNNLEDMP DGNSGLEVMR PLPSGLQNTD 60 FDSVRKRLAC AVVRFQEKIL HFDLNAGSLC QVWLPDHCDG GCFLKTKGLP FCVAGVGDLL 120 ALFRCVSCRY SFGTDVRFPD KLGAPGRVFT TGEPEMSSNV QKYSTAVYLR AAEAQQCRVH 180 STLVIPLFIT PEKQQAVGVL EVVQTVEDMH FTYVVETLTT VLEACGLYTC DLRAARSKEM 240 SESSNEVKAL VAKGLLQTNS LASNSSDNSR DNSRADVREG LSRGVLQERP EVVDESTCTS 300 RKRDNGSGPQ QTDTAGSVRG REQATMRPGP GGDNGKERTA GTMNLRKKAQ QESKAADIAA 360 NLRTQELASP PNMGGWDDAD DDDIDLGDND DDDDDEGQGK GKGGNSGKPG KKLKYEDLRS 420 QFGVGLKEAA SRLGICPTTL KRACRRHGIQ RWPRRTLLKL QRALDQISAT GTADLAGGKE 480 LLGMPGPDTR WTCLANIFPK IEENKKAALL EDPPSPEALG PSPAPAAAPP VQAPLQGGIS 540 IPALQQINAM QGPSSILEMQ GFGGPPFSMG YGNLGGMQYG FPQGLGPLPM NQAHLHPSMT 600 SAQVAFQQQA IQQAQQGIAA YTPYGNGLGV GMLFQQVPGY PTALDAFPAT SSIGLPSGLD 660 DDDIGIGTSL DCLEHILSSV SAPL*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MGGLEGMAST KLHLGSLEAP SFLAHGPAFS NQLNNLEDMP DGNSGLEVMR PLPSGLQNTD  60
FDSVRKRLAC AVVRFQEKIL HFDLNAGSLC QVWLPDHCDG GCFLKTKGLP FCVAGVGDLL  120
ALFRCVSCRY SFGTDVRFPD KLGAPGRVFT TGEPEMSSNV QKYSTAVYLR AAEAQQCRVH  180
STLVIPLFIT PEKQQAVGVL EVVQTVEDMH FTYVVETLTT VLEACGLYTC DLRAARSKEM  240
SESSNEVKAL VAKGLLQTNS LASNSSDNSR DNSRADVREG LSRGVLQERP EVVDESTCTS  300
RKRDNGSGPQ QTDTAGSVRG REQATMRPGP GGDNGKERTA GTMNLRKKAQ QESKAADIAA  360
NLRTQELASP PNMGGWDDAD DDDIDLGDND DDDDDEGQGK GKGGNSGKPG KKLKYEDLRS  420
QFGVGLKEAA SRLGICPTTL KRACRRHGIQ RWPRRTLLKL QRALDQISAT GTADLAGGKE  480
LLGMPGPDTR WTCLANIFPK IEENKKAALL EDPPSPEALG PSPAPAAAPP VQAPLQGGIS  540
IPALQQINAM QGPSSILEMQ GFGGPPFSMG YGNLGGMQYG FPQGLGPLPM NQAHLHPSMT  600
SAQVAFQQQA IQQAQQGIAA YTPYGNGLGV GMLFQQVPGY PTALDAFPAT SSIGLPSGLD  660
DDDIGIGTSL DCLEHILSSV SAPL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	9e-20	Nin-like family protein