PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bobra.0169s0109.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 686aa MW: 72983.2 Da PI: 5.1313 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 69.2 | 5.8e-22 | 411 | 459 | 3 | 51 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 k+++ edl+++F +k+AA+ Lg+c+T+LKr+CR++GI+RWP+R + + Bobra.0169s0109.1.p 411 KKLKYEDLRSQFGVGLKEAASRLGICPTTLKRACRRHGIQRWPRRTLLK 459 7899*****************************************9876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 686 aa Download sequence |
MGGLEGMAST KLHLGSLEAP SFLAHGPAFS NQLNNLEDMP DGNSGLEVMR PLPSGLQNTD 60 FDSVRKRLAC AVVRFQEKIL HFDLNAGSLC QVWLPDHCDG GCFLKTKGLP FCVAGVGDLL 120 ALFRCVSCRY SFGTDVRFPD KLGAPGRVFT TGEPEMSSNV QKYSTAVYLR AAEAQQCRVH 180 STLVIPLFIT PEKQQAVGVL EVVQTVEDMH FTYVVETLTT VLEACGLYTC DLRAARSKEM 240 SESSNEVKAL VAKGLLQTNS LASNSSDNSR DNSRADVREG LSRGVLQERP EVVDESTCTS 300 RKRDNGSGPQ QTDTAGSVRG REQATMRPGP GGDNGKERTA GTMNLRKKAQ QESKAADIAA 360 NLRTQELASP PNMGGWDDAD DDDIDLGDND DDDDDEGQGK GKGGNSGKPG KKLKYEDLRS 420 QFGVGLKEAA SRLGICPTTL KRACRRHGIQ RWPRRTLLKL QRALDQISAT GTADLAGGKE 480 LLGMPGPDTR WTCLANIFPK IEENKKAALL EDPPSPEALG PSPAPAAAPP VQAPLQGGIS 540 IPALQQINAM QGPSSILEQM QGFGGPPFSM GYGNLGGMQY GFPQGLGPLP MNQAHLHPSM 600 TSAQVAFQQQ AIQQAQQGIA AYTPYGNGLG VGMLFQQVPG YPTALDAFPA TSSIGLPSGL 660 DDDDIGIGTS LDCLEHILSS VSAPL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24020.1 | 9e-20 | Nin-like family protein |