PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0166s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | C3H | ||||||||
Protein Properties | Length: 1260aa MW: 130458 Da PI: 6.8596 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 1192 | 1213 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+ff C+ Gd+C+FaH Bobra.0166s0016.1.p 1192 RLCSFFNTPRGCRNGDQCRFAH 1213 8********************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1260 aa Download sequence |
MVAVIRPVTM DFWMDDSEQS LDLSLHPQDA CEQRSSLLPL GLDHNMEDSK PADLAPASTF 60 LQSLPSDPTP ASGAGGVDDE MQDWDHMATD GSAPDVHTFT SLLDGGLDPD GEGDLFGENR 120 DAGIADAPAS AASTPPVDDA CQLTSTSGRQ TGAYPEGLST DASGSELQQG PQLLPTRGVP 180 AVPAPSVTAA MPLGTQTMQL LLAPLPSSAT ASQPIDTPMS AHPIQQPPGG ALPLHLPQMP 240 QPGAPVLVPQ GANPADPSMN PILSLMQTNP LQAMLLQQAI LGTQAQLAAV MNAPSTAAAL 300 PGHPLPATLP AGQASSALQS LLTAGGAVPL ATLAGAVPLG TSMPMSSPPI LGAGPASEPL 360 PSQSLPPLSA SASAQAPTAS PGGEEGPDAK KRKRRTDLPR TRAGQRCGTC HTCRNPQFKK 420 ACETRRAEAL AAAAASGAET SGVSNGTSRT GSGDEPQPDA KPAADGKRHK PNTAAADYAT 480 LDSASTQPPA APEPPAGAPQ GPGSPKQDDR FTRDLQEIAN RSGGLRDASC VPRFEKLMEE 540 AATLNARKVL LTMINQSHRS TLSALVHSKG LGILEEWLNQ ARQSDRHVKF VAKILASLKN 600 LPVDLQGLKS CTIGKRVSNL AKKGPPEYQE AAAALVAAWK KAVDAEQSGP DKEGAKKAGP 660 KKAEGQGNGF LAHKNSLELK KAPAGSKPAA GPPAGGQPLA AVDDGLMFMA KPKPKLPPLA 720 PRSSGEIKKI KVLDAAQATK VAKEKAEEAK KIQEALKKKG KPGEVGTGGL ASGETSGPSH 780 PAGDLAGDPN SVAAPNNANT SALARPPFQF SNLTQNITRI GGLGTAPLVK GPGGPPLSYP 840 QDAAARAAAA RARIPSPEPP EHKEKAKTVS WVAEEHLVSF RVFRKDDPPI VVRQQGGPEM 900 EGKPGLAMEG GSHPPGFLLA ARKEHTDEAL HVKQLLSQKQ VSEEEEGGVV EGIVDSMYPD 960 MWWPEGGAPA AALPEEIAGG EESEAAREEA LREQGVQDPY VWDHSSSQVL VDPREAPQED 1020 VPFGQPVFIP LQPLTPARPA RGRSLGGTSS TAFTVRTSCC CTIYTATARA RSRVPARDGS 1080 PSWGRDSWTW LPGSPAPSPT SAWSVPWCTG SPGAWSTSAG TPCICSPRAS GACPTNGPTF 1140 GWAWRPRAPW GGGPPHGEGP PGPHQGWGAQ GTDEPRPSSA GRDPGDRGPP PRLCSFFNTP 1200 RGCRNGDQCR FAHIRGLGRG PCRDPQARSP QPPARLPQGF PPSLTSPPAA VLVHARVCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 390 | 395 | KKRKRR |