PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0159s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | C3H | ||||||||
Protein Properties | Length: 388aa MW: 42074.4 Da PI: 4.7024 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.2e-11 | 3 | 25 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +++Crff++ G C+yGd+C F+H Bobra.0159s0035.1.p 3 QRPPCRFFMQ-GNCRYGDSCAFSH 25 689*******.************* PP | |||||||
2 | zf-CCCH | 25.7 | 2e-08 | 33 | 57 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f++ G C+yGd C+F H+ Bobra.0159s0035.1.p 33 PGRRVCTYFMQ-GGCHYGDDCQFEHP 57 689********.***********997 PP | |||||||
3 | zf-CCCH | 28.4 | 2.7e-09 | 232 | 254 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC +++ +G C++G+ C+FaHg Bobra.0159s0035.1.p 232 PLCVNYFSNGSCPRGNACRFAHG 254 69********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence |
MDQRPPCRFF MQGNCRYGDS CAFSHLITPG PVPGRRVCTY FMQGGCHYGD DCQFEHPGVH 60 RGGRYGGSHQ RGRGRTGLNA SAPVWTPRGY AHANGNRHTY VPEEDDDYAS DEERFLAELE 120 EQKFFEEQRE FLEEAMPDEG IGGQASIPSI PSSELDAAID ALAEDLERTG VAVQKENPHG 180 PPQENGPQAP SAEETAAERQ EEPVEAAGSQ QEAVEAGAEA EAPARSPRPD WPLCVNYFSN 240 GSCPRGNACR FAHGLLCEVC GKHALHPDIP DDAEAHTRAC KAREERLNKQ PAAAELECSI 300 CLEKVLSKEN AGERKFGLLS CEHPFCLACH PGLASPSRLC SCPGHCGTDV PSLPYTVLLR 360 DPELSVAWES SREGDNPGEL QGQAGVH* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 5e-26 | C3H family protein |