PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0157s0022.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 709aa MW: 77015.4 Da PI: 7.6678

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0157s0022.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	26	69	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT +E +lv++v +G++ W++Ia+ + gRt+kqc++r++++ Bobra.0157s0022.1.p 26 GRWTDDETRQLVKLVDTYGTN-WTKIAELFE-GRTGKQCRERYHNH 69 8****************99.*****.**********97 PP
2	Myb_DNA-binding	35.5	2.3e-11	78	121	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT++E+ l+ +k++G+ W+ Ia+++g gR++ + k++w++ Bobra.0157s0022.1.p 78 QAWTPQEEWMLISQHKEHGNS-WTQIAECLG-GRSESSTKNKWYST 121 79***************99.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MDCATKTEQT SSRETSPNEE CHPCGGRWTD DETRQLVKLV DTYGTNWTKI AELFEGRTGK 60 QCRERYHNHG REGLVKEQAW TPQEEWMLIS QHKEHGNSWT QIAECLGGRS ESSTKNKWYS 120 TKRAKQVSEP PTLLQQYIIN LASMKKETAY RSLVPTARAM GLLNPSSGEE DDSGDSDSSA 180 EVLKYRGTRS RPMRLSRRSR TPPPRPPRPN VRRKLLMVPS SQSPSHTELP PSGAASTSEQ 240 QDIAPRPTWE PLTALPPCHS PPANLPLLPD RPSQDAHDTW ASVCMRPRAM GMSPPSEIIT 300 PQQDGTYAGA AHLVRERFKR RATFPGSSDD RVGPSELGLS NIGRCSSWPA EGVIGPPEST 360 SGSPRMGASV RHPAACSQGP QTSGDPFCQG PRPSGDPFCQ GPRPSGGLYH QEPQRVGDQN 420 RQGPSPSYLS PTCQRLSPGT HRISLGSATT SSSPREPLTY TVADGSRGGA VIPGSSPGSH 480 PAWGPPSPAW GPPQCHVQAF PRKSEAKLES PPYSGYRYAA AATPTLTYSP APLPLPVPPQ 540 ESFVGTRGSP TESKALNEPS VPLLVSGIMP PPQSLLTPLP LNPPPRGNIL PSPPELFLPR 600 VEEGAFLPGA HFPVQTCSSP LGLAPFLLEP LGEGLPHCKP LDMSQHVPLR QVSWLQGINI 660 HTPNVQRAME EGDRLPWTEI HDGVDTWPDR GDLHHMCNSI RDDSVCNL*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MDCATKTEQT SSRETSPNEE CHPCGGRWTD DETRQLVKLV DTYGTNWTKI AELFEGRTGK  60
QCRERYHNHG REGLVKEQAW TPQEEWMLIS QHKEHGNSWT QIAECLGGRS ESSTKNKWYS  120
TKRAKQVSEP PTLLQQYIIN LASMKKETAY RSLVPTARAM GLLNPSSGEE DDSGDSDSSA  180
EVLKYRGTRS RPMRLSRRSR TPPPRPPRPN VRRKLLMVPS SQSPSHTELP PSGAASTSEQ  240
QDIAPRPTWE PLTALPPCHS PPANLPLLPD RPSQDAHDTW ASVCMRPRAM GMSPPSEIIT  300
PQQDGTYAGA AHLVRERFKR RATFPGSSDD RVGPSELGLS NIGRCSSWPA EGVIGPPEST  360
SGSPRMGASV RHPAACSQGP QTSGDPFCQG PRPSGDPFCQ GPRPSGGLYH QEPQRVGDQN  420
RQGPSPSYLS PTCQRLSPGT HRISLGSATT SSSPREPLTY TVADGSRGGA VIPGSSPGSH  480
PAWGPPSPAW GPPQCHVQAF PRKSEAKLES PPYSGYRYAA AATPTLTYSP APLPLPVPPQ  540
ESFVGTRGSP TESKALNEPS VPLLVSGIMP PPQSLLTPLP LNPPPRGNIL PSPPELFLPR  600
VEEGAFLPGA HFPVQTCSSP LGLAPFLLEP LGEGLPHCKP LDMSQHVPLR QVSWLQGINI  660
HTPNVQRAME EGDRLPWTEI HDGVDTWPDR GDLHHMCNSI RDDSVCNL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	3e-27	MYB family protein