PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0149s0035.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 835aa MW: 93476.2 Da PI: 8.1442

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0149s0035.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.5e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G ++W++I++ + ++++kqck rw+ +l Bobra.0149s0035.1.p 8 GVWKNTEDEILKAAVMKYGLNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	34.3	5.5e-11	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W++Ia +g Rt+ qc++r+ k+l Bobra.0149s0035.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRSIAPIVG--RTPAQCIERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGLNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRSIAPIVGR TPAQCIERYE KLLDAAAAKD DAYDPADDPR 120 RLRPGEIDPN PEAKPARPDP IDMDEDEKEM LSEARARLAN TRGKKAKRKA REKAMEEARR 180 LATLQKKREL KAAGIELREK SFRRRGINYN KEVAFEKKPT IGFYDTAAEQ ERTKEVGKDF 240 KPVTLEEMEG KRRKDIEAAL MKRDEEKLQE RQKMNQPAAV AKALELNDVA TMRRRGKMML 300 PAPQVSEAEL EAIARGGSEA DVDPDLVEGA GGDATRRLLG DYQTPRGVQG PIRTPRIAGP 360 QGQDRIMQEA ANLAKMVAAQ TPLAGGENPD VSTTDFSAIT PRAPIASTPN PLAASLTPAR 420 PGGVGATPAL GMTPLMGGSR AIAGVGMTPS VAGTPLRHPG ATPAHGAQGF GATPMRTPIR 480 DELGLNDPDV LAKQAEATRR EARLHEAAVR QDVRMGLSGL PAPKNEYQIM VPENFIEDEP 540 MEEVIEEDAA DIAERKRAEA KAREEAELSK RSQVLQRGLP RPTGLAGLLE LQPIQQPGAN 600 VTREGVEALL QAEVLALIQH EATRYPLKDK KKSKKRSRQE SDGSGDNAWQ EFEVEELAHA 660 SKLLKDEVAF VRKAMGHDKV SEQEYLTFWE SAMKDFIWLP SKKRYERNAS ATNTERLQSI 720 QDDHESIRTE MGKEAGRAKK LEDKINILLK GYQLRSAKLG KQLLDLNEEV EEAARESRSF 780 QALKDQEESV VFQRFDELNA RVESQQQREK EMQLRYKTLM DEEYYLKKEL TESG*

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGLNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRSIAPIVGR TPAQCIERYE KLLDAAAAKD DAYDPADDPR  120
RLRPGEIDPN PEAKPARPDP IDMDEDEKEM LSEARARLAN TRGKKAKRKA REKAMEEARR  180
LATLQKKREL KAAGIELREK SFRRRGINYN KEVAFEKKPT IGFYDTAAEQ ERTKEVGKDF  240
KPVTLEEMEG KRRKDIEAAL MKRDEEKLQE RQKMNQPAAV AKALELNDVA TMRRRGKMML  300
PAPQVSEAEL EAIARGGSEA DVDPDLVEGA GGDATRRLLG DYQTPRGVQG PIRTPRIAGP  360
QGQDRIMQEA ANLAKMVAAQ TPLAGGENPD VSTTDFSAIT PRAPIASTPN PLAASLTPAR  420
PGGVGATPAL GMTPLMGGSR AIAGVGMTPS VAGTPLRHPG ATPAHGAQGF GATPMRTPIR  480
DELGLNDPDV LAKQAEATRR EARLHEAAVR QDVRMGLSGL PAPKNEYQIM VPENFIEDEP  540
MEEVIEEDAA DIAERKRAEA KAREEAELSK RSQVLQRGLP RPTGLAGLLE LQPIQQPGAN  600
VTREGVEALL QAEVLALIQH EATRYPLKDK KKSKKRSRQE SDGSGDNAWQ EFEVEELAHA  660
SKLLKDEVAF VRKAMGHDKV SEQEYLTFWE SAMKDFIWLP SKKRYERNAS ATNTERLQSI  720
QDDHESIRTE MGKEAGRAKK LEDKINILLK GYQLRSAKLG KQLLDLNEEV EEAARESRSF  780
QALKDQEESV VFQRFDELNA RVESQQQREK EMQLRYKTLM DEEYYLKKEL TESG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein