PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0144s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | NF-YC | ||||||||
Protein Properties | Length: 191aa MW: 20546.8 Da PI: 4.4406 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 42.3 | 1.6e-13 | 6 | 50 | 49 | 93 |
NF-YC 49 kacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 +a elfi +ltlr+ ae+ krrtl+k+di++a++ td fdfl Bobra.0144s0036.1.p 6 QASELFISDLTLRALGIAESYKRRTLQKNDIDEAINTTDLFDFLE 50 699****************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence |
MVSGKQASEL FISDLTLRAL GIAESYKRRT LQKNDIDEAI NTTDLFDFLE LRRFSLQVDI 60 VTSDNPASAP GVEGAPNGAR ETLQCPGQMS TIATMQNMND TIGMAGIDNV VNRGLLKRIL 120 GNEVSASGSY LNTLECFGTA HVLPFPFHDV GAHLNETNLR HDPQHVDDGH AMPDSSPQVD 180 VHDGDGQGTE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 34 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 3e-12 | NF-YC family protein |