PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0138s0027.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 882aa MW: 95387.9 Da PI: 9.6467

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0138s0027.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1.1e-14	15	56	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+WT +Ed+ll + ++lG++ W+++a++++ gRt+ qc rw+ Bobra.0138s0027.1.p 15 GAWTSQEDKLLSEWQAKLGNR-WSAVAKKIP-GRTGQQCAQRWR 56 89*****************.*****.*********8 PP
2	Myb_DNA-binding	46.1	1.1e-14	65	110	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT +Ed +l +++k +G+ W+ I+r+m+ gRt+ qc rw+ +l Bobra.0138s0027.1.p 65 KEKWTDDEDRQLMRLFKTYGNA-WAEISRCMN-GRTDQQCMGRWRRHL 110 679*****************.*****.**********986 PP
3	Myb_DNA-binding	35.2	2.9e-11	117	160	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + W + Ed l + +++G+ W++Ia+ ++ gRt+ qc+ r++++ Bobra.0138s0027.1.p 117 DIWQEAEDRALMQQYELHGSS-WSSIAKSIP-GRTAQQCRARFFQL 160 66***************99.*****.********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MPMPTHINGK PVRTGAWTSQ EDKLLSEWQA KLGNRWSAVA KKIPGRTGQQ CAQRWRHKVN 60 PNIRKEKWTD DEDRQLMRLF KTYGNAWAEI SRCMNGRTDQ QCMGRWRRHL DPSIKRDIWQ 120 EAEDRALMQQ YELHGSSWSS IAKSIPGRTA QQCRARFFQL EADGVVERGP PTDRPQSRGR 180 KSRLRQRRAH SSDLSDGEAE DGLEEDDEAY GDVEEDSEQE TMVEGPDGML RPKLKLRRNQ 240 SNARSAVPEV LDDMCAADDS GDDDVPSSQL STPTSKFLAR GARGRAPLGK EADASLWGTS 300 HRSCHTAPMP PGGKPSLSTT MQRRESMHSV RSRWAAREWG ESESNSPILI QDPARALDSP 360 SPGGILIRGP PASEGEGAVL CNPPSIFRDE DLVWTTPGKS RNRHGRVPMQ GPNFDSPLSC 420 STPPGSSRPA NPDAQPPGTC ARSLSRVFNS YVSPAGRHVK SPGPSIFSPQ RQHPSQTRGG 480 SQRITPHTPL SESHRGGSRL EMQPSPFNSP YNILSLLDTP QQSTHRGDPL KSPLGKWGQD 540 TPDWAVGSRR STEARTAPPL YISPGNLPGA GRPLNRGPVA RRLIIDQALK KSSAEALSMR 600 LEAAKDNLVE ASPLKRMRRD AGPSGGLGVE GPSAFKCIGR SEPSSCSPPT LVPQPGSAPG 660 PIATWTVRQS ALVPPAPAEG SGAPSQDLLK PSGSGSQMHP QTSNPRLQED PPAAPLPSPV 720 APAHQAPGAS AGVCCQLSQY IQLPKVHTLH PMSPTPLNLP DSIGWQVKSL EMLNQRAVQC 780 SGIGQYTSGP ASPWKENDEP GSDAFGLPSS PPHQRLSTPR GSPAGCRDLF RQLSPLGARA 840 VETLALVRDA KSISSPSNCA RVPGLSRCSG NRPHLHAVQG A*

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MPMPTHINGK PVRTGAWTSQ EDKLLSEWQA KLGNRWSAVA KKIPGRTGQQ CAQRWRHKVN  60
PNIRKEKWTD DEDRQLMRLF KTYGNAWAEI SRCMNGRTDQ QCMGRWRRHL DPSIKRDIWQ  120
EAEDRALMQQ YELHGSSWSS IAKSIPGRTA QQCRARFFQL EADGVVERGP PTDRPQSRGR  180
KSRLRQRRAH SSDLSDGEAE DGLEEDDEAY GDVEEDSEQE TMVEGPDGML RPKLKLRRNQ  240
SNARSAVPEV LDDMCAADDS GDDDVPSSQL STPTSKFLAR GARGRAPLGK EADASLWGTS  300
HRSCHTAPMP PGGKPSLSTT MQRRESMHSV RSRWAAREWG ESESNSPILI QDPARALDSP  360
SPGGILIRGP PASEGEGAVL CNPPSIFRDE DLVWTTPGKS RNRHGRVPMQ GPNFDSPLSC  420
STPPGSSRPA NPDAQPPGTC ARSLSRVFNS YVSPAGRHVK SPGPSIFSPQ RQHPSQTRGG  480
SQRITPHTPL SESHRGGSRL EMQPSPFNSP YNILSLLDTP QQSTHRGDPL KSPLGKWGQD  540
TPDWAVGSRR STEARTAPPL YISPGNLPGA GRPLNRGPVA RRLIIDQALK KSSAEALSMR  600
LEAAKDNLVE ASPLKRMRRD AGPSGGLGVE GPSAFKCIGR SEPSSCSPPT LVPQPGSAPG  660
PIATWTVRQS ALVPPAPAEG SGAPSQDLLK PSGSGSQMHP QTSNPRLQED PPAAPLPSPV  720
APAHQAPGAS AGVCCQLSQY IQLPKVHTLH PMSPTPLNLP DSIGWQVKSL EMLNQRAVQC  780
SGIGQYTSGP ASPWKENDEP GSDAFGLPSS PPHQRLSTPR GSPAGCRDLF RQLSPLGARA  840
VETLALVRDA KSISSPSNCA RVPGLSRCSG NRPHLHAVQG A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-30	MYB family protein