PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0129s0014.2.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

SBP

Protein Properties

Length: 1134aa MW: 123073 Da PI: 6.1609

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0129s0014.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	98.9	4.4e-31	32	109	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve C adl+++key+ r+k+Ce++ k +++ +g++qrfCq C+rfh+++ fD +krsCr+rL++hn+rrrk+++ Bobra.0129s0014.2.p 32 RCQVETCCADLTDLKEYYLRYKICEKCQKLRSIIRDGKRQRFCQLCGRFHNIEAFDGDKRSCRTRLQRHNARRRKQKP 109 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1134 aa Download sequence
MTDLIEFTNC RLGPAGAIMM PALAARKQET LRCQVETCCA DLTDLKEYYL RYKICEKCQK 60 LRSIIRDGKR QRFCQLCGRF HNIEAFDGDK RSCRTRLQRH NARRRKQKPD STSQGPTGSG 120 TMDVDQPLGA DDVASSKKKR VNSRVAATRE MAPEVCRSAS SQLPGAHTFR QPEHIFRQMQ 180 LSQPTPSWPK LEDKAELDCL GGSPCEQGAD VVKASSPGTS RPSASWGQGS QQDGRGSTPG 240 RSSPHSQVSE LVSKPSMSSS SPGTHLVPEV GGWPADYTMQ LRLPAISKHD WAVSAPSPSM 300 INKPHFMTAE MASMQQPIGG VSAGQKSLDM LDMIHMPDIV EPDSIFPMRL VDMSRSCDDM 360 HPFAPGVSDC GPTEPSWGNE IMPMGTAGND VSGALPWSWQ PQQHIPQVPH TCPVTPVMHP 420 IPGVDIPFPV APEEFSNPAY ATLHTLGSPV DLAYDTSMCP GSTAWAARPM EHSLPSSSGD 480 VCSELADAHN LLNASFHVNP IEVRARFSAK ISHITPDDLP RNLHQQLVDL MPVTMNGVTG 540 YVRPGCVYLT VAFGVDAADA KTLQASSILQ ALDHLMSLPH AEFWRLQTAV VQLYNELVLI 600 RGGQVVRTLD LELSSAVNPC LTKVLPVAVK QGTTSILTLL GRNLDCPDCV IVARSQGQQR 660 YLQRLEESRG AAPADGNAGD SLRVILPPDL PPGGLQIEVA CKAYLTDFQV VLILEKQDVI 720 EEIRQLEIDS TCMDETNSIL LDFDRVIELL RVSAAVKAGR YVRLPYKPNY AILVKLAQRL 780 FVIATRKGWP TVARTVLGVA CMQAQSIVDV VRSMHTMSHG LSLLHLAVCS GNPKMVEFVL 840 EWTSSAGLEL SAAAPSAGGF TPLHLAALHN DDGKMAVTLT TLCVDGKDAW KVAGKLLTPF 900 DLAQLAGTAD QIQKRLIEAA REIEEMTAAH DAAVLKDDLL DGSDEEYPST DTDCDSVNSD 960 DPDCLNSRKE MASSGSKHSS SAPQVAEEEC EACCSSLMAR KNCQKELSAP RAAVFPEEEP 1020 ASLKSNRRLI GADYNLLPSP KKVSHYSVSK SEAEGKKGAL WRGLEKPGVQ RPGASHSYGS 1080 IQTYQQLLQE ADSDEEDFNS KSSGIFIYAC IPTVNNLHLY GPGNPLQSLL STI*

Sequence ? help Back to Top

Protein Sequence Length: 1134 aa Download sequence

MTDLIEFTNC RLGPAGAIMM PALAARKQET LRCQVETCCA DLTDLKEYYL RYKICEKCQK  60
LRSIIRDGKR QRFCQLCGRF HNIEAFDGDK RSCRTRLQRH NARRRKQKPD STSQGPTGSG  120
TMDVDQPLGA DDVASSKKKR VNSRVAATRE MAPEVCRSAS SQLPGAHTFR QPEHIFRQMQ  180
LSQPTPSWPK LEDKAELDCL GGSPCEQGAD VVKASSPGTS RPSASWGQGS QQDGRGSTPG  240
RSSPHSQVSE LVSKPSMSSS SPGTHLVPEV GGWPADYTMQ LRLPAISKHD WAVSAPSPSM  300
INKPHFMTAE MASMQQPIGG VSAGQKSLDM LDMIHMPDIV EPDSIFPMRL VDMSRSCDDM  360
HPFAPGVSDC GPTEPSWGNE IMPMGTAGND VSGALPWSWQ PQQHIPQVPH TCPVTPVMHP  420
IPGVDIPFPV APEEFSNPAY ATLHTLGSPV DLAYDTSMCP GSTAWAARPM EHSLPSSSGD  480
VCSELADAHN LLNASFHVNP IEVRARFSAK ISHITPDDLP RNLHQQLVDL MPVTMNGVTG  540
YVRPGCVYLT VAFGVDAADA KTLQASSILQ ALDHLMSLPH AEFWRLQTAV VQLYNELVLI  600
RGGQVVRTLD LELSSAVNPC LTKVLPVAVK QGTTSILTLL GRNLDCPDCV IVARSQGQQR  660
YLQRLEESRG AAPADGNAGD SLRVILPPDL PPGGLQIEVA CKAYLTDFQV VLILEKQDVI  720
EEIRQLEIDS TCMDETNSIL LDFDRVIELL RVSAAVKAGR YVRLPYKPNY AILVKLAQRL  780
FVIATRKGWP TVARTVLGVA CMQAQSIVDV VRSMHTMSHG LSLLHLAVCS GNPKMVEFVL  840
EWTSSAGLEL SAAAPSAGGF TPLHLAALHN DDGKMAVTLT TLCVDGKDAW KVAGKLLTPF  900
DLAQLAGTAD QIQKRLIEAA REIEEMTAAH DAAVLKDDLL DGSDEEYPST DTDCDSVNSD  960
DPDCLNSRKE MASSGSKHSS SAPQVAEEEC EACCSSLMAR KNCQKELSAP RAAVFPEEEP  1020
ASLKSNRRLI GADYNLLPSP KKVSHYSVSK SEAEGKKGAL WRGLEKPGVQ RPGASHSYGS  1080
IQTYQQLLQE ADSDEEDFNS KSSGIFIYAC IPTVNNLHLY GPGNPLQSLL STI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	8e-23	SBP family protein