PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0095s0016.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C3H

Protein Properties

Length: 698aa MW: 74307.7 Da PI: 6.505

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0095s0016.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	65	86	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f+++G C +Gd+C++aHg Bobra.0095s0016.1.p 65 ACQTFRKNGSCERGDSCPYAHG 86 7********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MATQRDQAYD LGDPMFATDD FRCFRYKVEL CPRGRPHDWT QCPYAHPQEK AKRRDPKQFK 60 YSGTACQTFR KNGSCERGDS CPYAHGVFEC WLHPARYRTQ MCTDGKSCNR RVCFFAHDES 120 EIRTQPVDAN SADGDTGEKA EFSSADVPML LDALKKLLAS QSNDSSTQAL QRGVTSLLAQ 180 QQKQQTPAPQ QQLQQQPSVS SSLQVPVSVE MDSDFLGCGA SQPLIQQLVQ NPELRHSLVQ 240 ALIEQEVNRD QQLFDRNLYL SQNQHDSDNL DPLVMACASS NGMMDVVPGM PQMPQLSFDP 300 GTPVLGMYGA GLGATDPNMM LPQNASTSSL NNLLANANGA FGSHTAADTQ RRSVDLGEMA 360 HRRGNFTLTG PVPALFSLQA SSRAGSGGPG ALYQRDVSFS GNGQTNGVGA HGVMGAMNPS 420 SAAHQAAALL LNGGHRSRGV ASHGRMVRPT QQFAPSMFHG SQDASGLLPG QLAKLGALNL 480 QQRSAATSAR SSLDLQPTII RAPGDEPRRY SVDIAGQYAP AIQTALPTAE AALIAGPDAY 540 SRVGALTGYP GLATRDTDFV NGYGYQSLID PSSLHAGNAS YANDHTGYSM PVTGSMSMGS 600 FHGELGMDAR EAASGGRANG SSHMNGSAGS PGPKVADRAG VNYGLGALQA LQQLSLQEAV 660 KRADSFEQIL KDLPQCESGL RETGLRFEEA AINSSAG*

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MATQRDQAYD LGDPMFATDD FRCFRYKVEL CPRGRPHDWT QCPYAHPQEK AKRRDPKQFK  60
YSGTACQTFR KNGSCERGDS CPYAHGVFEC WLHPARYRTQ MCTDGKSCNR RVCFFAHDES  120
EIRTQPVDAN SADGDTGEKA EFSSADVPML LDALKKLLAS QSNDSSTQAL QRGVTSLLAQ  180
QQKQQTPAPQ QQLQQQPSVS SSLQVPVSVE MDSDFLGCGA SQPLIQQLVQ NPELRHSLVQ  240
ALIEQEVNRD QQLFDRNLYL SQNQHDSDNL DPLVMACASS NGMMDVVPGM PQMPQLSFDP  300
GTPVLGMYGA GLGATDPNMM LPQNASTSSL NNLLANANGA FGSHTAADTQ RRSVDLGEMA  360
HRRGNFTLTG PVPALFSLQA SSRAGSGGPG ALYQRDVSFS GNGQTNGVGA HGVMGAMNPS  420
SAAHQAAALL LNGGHRSRGV ASHGRMVRPT QQFAPSMFHG SQDASGLLPG QLAKLGALNL  480
QQRSAATSAR SSLDLQPTII RAPGDEPRRY SVDIAGQYAP AIQTALPTAE AALIAGPDAY  540
SRVGALTGYP GLATRDTDFV NGYGYQSLID PSSLHAGNAS YANDHTGYSM PVTGSMSMGS  600
FHGELGMDAR EAASGGRANG SSHMNGSAGS PGPKVADRAG VNYGLGALQA LQQLSLQEAV  660
KRADSFEQIL KDLPQCESGL RETGLRFEEA AINSSAG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	7e-52	C3H family protein