PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0095s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 37318.8 Da PI: 10.2538 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 69 | 113 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eEde+l+ +v ++G + W+ Ia++++ gR +kqc++rw++ Bobra.0095s0011.1.p 69 TAWLPEEDEKLASLVDRHGQRVWSYIAQHFP-GRIGKQCRERWNNQ 113 68*****************************.************96 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.7e-18 | 120 | 162 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT+eE+e+lv a++++G+ W+ Ia+++ gR+++++k++w+ Bobra.0095s0011.1.p 120 RDAWTPEEEEQLVVAHQKMGNC-WAEIAKHIA-GRSENSVKNHWN 162 789*****************99.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence |
MYSSTDLDGS DAQSDLSAFP CTSLTVQKEK DGSHATSTFR GRSADSNCSE ETKYVSKKKR 60 RHLLAKIKTA WLPEEDEKLA SLVDRHGQRV WSYIAQHFPG RIGKQCRERW NNQLRPGIRR 120 DAWTPEEEEQ LVVAHQKMGN CWAEIAKHIA GRSENSVKNH WNATCRRSDT VSGKSNTSPL 180 KEYIRSLGIA GRKKHCGKRG RSTAASPASA RSTPCKSSTP PRSKRARSQS FEEQTIGRSS 240 SLDSSATTLR KSRSRSFQST QCLDHLACHE VLGDEGETAA VPSHEGGLPT AGGVGPPARA 300 ARLDDVQQPH LLAGQPGPLQ LRLRDAFRLV PPPLVHGGW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 61 | KKKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 5e-41 | MYB family protein |