PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0089s0005.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

E2F/DP

Protein Properties

Length: 579aa MW: 63537.2 Da PI: 8.1066

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0089s0005.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	64.6	1.4e-20	9	74	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk ksL+ll+++f+ + +++ +i++l++++ +L v rRR+YD++NVLe+++++++++kn++ w g Bobra.0089s0005.1.p 9 RKAKSLGLLCENFIGTYGQVHGDIISLDDASLRL---GV--PRRRLYDVVNVLESIHIVSRQQKNRYMWLG 74 799*****************************.....****************************87 PP
2	E2F_TDP	54.8	1.6e-17	124	206	1	69
E2F_TDP 1 rkeksLrlltqkflkllek...seegivtlnevakeLvse.......dvknkrRRiYDilNVLealnliek.....kekneirw 69 r+eksL +l+++f+++l +++ivtl+ ++++L + + k++ RR+YDi+N+L++l+liek +k+++rw Bobra.0089s0005.1.p 124 RREKSLAMLSKRFVQMLLAgtpGQDTIVTLDAASRRLE-DesdsnpcKKKTRARRLYDIANILSSLRLIEKtqsldGRKPAFRW 206 689***********9987767779*******4.46**9999******************9999889999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MESGDKYNRK AKSLGLLCEN FIGTYGQVHG DIISLDDASL RLGVPRRRLY DVVNVLESIH 60 IVSRQQKNRY MWLGFENVAG AMRRLRSGNL AGPKELSPCG TDGELDDGLT DSDAPKTPQV 120 GNHRREKSLA MLSKRFVQML LAGTPGQDTI VTLDAASRRL EDESDSNPCK KKTRARRLYD 180 IANILSSLRL IEKTQSLDGR KPAFRWCYLN PFNKQHVIAD SPPAYSARPE PPRRPYEQIK 240 EEAAPRLRLC GQVRPAKFPP LLTSPFASAP QQGPRKCPAD DLARGGGPCI SECPAGVMGP 300 VPKKPRSSLP VRRSVNQAQE LYPETPLPVA YASVRNPFRR DEHSQLVQEA SHTMTDEETL 360 QDFQYHNPHS YGPTEDSGPM CGGPSYETLP WSHTPPDTCQ VPNQMAPSSQ HNFQTDAIKQ 420 ALSSFFAPSI VNTYQHDQSA VSSLVSNMLS NYKQFWQQLH QLNNVAPSSS SAHLLNSLPS 480 DDEVQDMLGV NQRQDVPSWP QHHAGIAPAA NPNYGYNPTG ISRVPALSSY APRYTAGNEG 540 LQGRESGGPI DSFESYAAAL SGPNGLVNSL SGQFAASR*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MESGDKYNRK AKSLGLLCEN FIGTYGQVHG DIISLDDASL RLGVPRRRLY DVVNVLESIH  60
IVSRQQKNRY MWLGFENVAG AMRRLRSGNL AGPKELSPCG TDGELDDGLT DSDAPKTPQV  120
GNHRREKSLA MLSKRFVQML LAGTPGQDTI VTLDAASRRL EDESDSNPCK KKTRARRLYD  180
IANILSSLRL IEKTQSLDGR KPAFRWCYLN PFNKQHVIAD SPPAYSARPE PPRRPYEQIK  240
EEAAPRLRLC GQVRPAKFPP LLTSPFASAP QQGPRKCPAD DLARGGGPCI SECPAGVMGP  300
VPKKPRSSLP VRRSVNQAQE LYPETPLPVA YASVRNPFRR DEHSQLVQEA SHTMTDEETL  360
QDFQYHNPHS YGPTEDSGPM CGGPSYETLP WSHTPPDTCQ VPNQMAPSSQ HNFQTDAIKQ  420
ALSSFFAPSI VNTYQHDQSA VSSLVSNMLS NYKQFWQQLH QLNNVAPSSS SAHLLNSLPS  480
DDEVQDMLGV NQRQDVPSWP QHHAGIAPAA NPNYGYNPTG ISRVPALSSY APRYTAGNEG  540
LQGRESGGPI DSFESYAAAL SGPNGLVNSL SGQFAASR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	1e-43	E2F/DP family protein