PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0077s0045.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C3H

Protein Properties

Length: 873aa MW: 93495.4 Da PI: 7.383

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0077s0045.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	8.8e-12	748	772	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+ff++tG+Ck+G++CkF H+ Bobra.0077s0045.1.p 748 GQTVCDFFSKTGHCKFGEQCKFDHP 772 6789********************8 PP
2	zf-CCCH	38.6	1.8e-12	788	813	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C ff rtG+Ck+G++CkF+H+ Bobra.0077s0045.1.p 788 PGEPICGFFERTGECKFGASCKFHHP 813 5799*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MPTPFCLDVV EQAAQGLMAL HERGIVHRDL KPHNVLLTEN NRVKISDMGL CKRVALEQSS 60 FDSPGPGGSS GWQAPEQLVN RSGGDMRQGK SVDVFSYGLL LFYCLSGGEH AFGKSYERDL 120 RILQARPGLQ AVRHMPEAEN LVKCMIHPNG KKRPPMAAVM AHPFWWSPAR RLAFLIHLSD 180 RVEPEDREED KTLLAALEEC MEEAVGGRDW SVRLDPKFID SLGKYRKYNY CSLRDLLRVI 240 RNKHNHFRDM SPDLQAKLGP VPEGYIRYFA TRFPRLLLTA YGFALKHCAG DDTLRQYFPP 300 AARSYNFLSD LPSRQEAKAA ASRATAAVKE AAGAQSLKDS RDGMVSDPAG PLVWASLEPI 360 PETNDDVQGR AHSAPVPLGG SATGEPEALE VAAVSAEPET SSPPEAMPSW FLEPVCGPFS 420 SPALESSLLP PLPVRRALGE APGTPVVGTL GEAPATPSHS QGWAMGGLWG THSHVQPEPQ 480 STPDPVWDWG PRTSGGTAAA STAPATLTAG RSGSPLWWPS LGVPPGTSAG GASTPPPPDP 540 LAVPESPSFN GVLQGLNIQS PLLSTPWATP PPPIKSRLDP NGARDGGANT ALAHKFWATS 600 GGTLGLPDAT PPPASPLTTS ALLPPTSPWS PRVEDTDVTS RLKPRVLSGF HHRSGSDGAF 660 LHLNRSPSEV ASSYRHQRSS SGDAFPLGRP AGLGGGRSEE EMDHIGFQLY RELLDPIGDE 720 SGRDGQPSSN GAAASTSSGI PRFPQRPGQT VCDFFSKTGH CKFGEQCKFD HPACYAVKYN 780 LARLPLRPGE PICGFFERTG ECKFGASCKF HHPDYPLDHV FENGSRVGPR LSLSQPPSPA 840 LAASPLPPGS APGKLRRPSG DVSKSHPSPA FR*

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MPTPFCLDVV EQAAQGLMAL HERGIVHRDL KPHNVLLTEN NRVKISDMGL CKRVALEQSS  60
FDSPGPGGSS GWQAPEQLVN RSGGDMRQGK SVDVFSYGLL LFYCLSGGEH AFGKSYERDL  120
RILQARPGLQ AVRHMPEAEN LVKCMIHPNG KKRPPMAAVM AHPFWWSPAR RLAFLIHLSD  180
RVEPEDREED KTLLAALEEC MEEAVGGRDW SVRLDPKFID SLGKYRKYNY CSLRDLLRVI  240
RNKHNHFRDM SPDLQAKLGP VPEGYIRYFA TRFPRLLLTA YGFALKHCAG DDTLRQYFPP  300
AARSYNFLSD LPSRQEAKAA ASRATAAVKE AAGAQSLKDS RDGMVSDPAG PLVWASLEPI  360
PETNDDVQGR AHSAPVPLGG SATGEPEALE VAAVSAEPET SSPPEAMPSW FLEPVCGPFS  420
SPALESSLLP PLPVRRALGE APGTPVVGTL GEAPATPSHS QGWAMGGLWG THSHVQPEPQ  480
STPDPVWDWG PRTSGGTAAA STAPATLTAG RSGSPLWWPS LGVPPGTSAG GASTPPPPDP  540
LAVPESPSFN GVLQGLNIQS PLLSTPWATP PPPIKSRLDP NGARDGGANT ALAHKFWATS  600
GGTLGLPDAT PPPASPLTTS ALLPPTSPWS PRVEDTDVTS RLKPRVLSGF HHRSGSDGAF  660
LHLNRSPSEV ASSYRHQRSS SGDAFPLGRP AGLGGGRSEE EMDHIGFQLY RELLDPIGDE  720
SGRDGQPSSN GAAASTSSGI PRFPQRPGQT VCDFFSKTGH CKFGEQCKFD HPACYAVKYN  780
LARLPLRPGE PICGFFERTG ECKFGASCKF HHPDYPLDHV FENGSRVGPR LSLSQPPSPA  840
LAASPLPPGS APGKLRRPSG DVSKSHPSPA FR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	2e-19	C3H family protein