PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0073s0047.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C3H

Protein Properties

Length: 782aa MW: 83269.4 Da PI: 7.4378

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0073s0047.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	377	399	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++ tG C+ G+ C++aH+p Bobra.0073s0047.1.p 377 MCKYWINTGKCHKGAVCRYAHPP 399 6********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence
MIQCITGQLI YKRALSRRLV FFDLEVHSKC AESHTVELIL KAGEGLTQEE VRDLRDTLKL 60 GDVATAWGHM GRTCSELLVH RISIVSRWKD THPREAFRPR QAHKPAAAAP SHISHGSHMG 120 GVNRIPPAPS SEPCQQVLAE SLSAAAENAR WNLSGRQDAS QSCHGFETIP MGALLLGPSV 180 PHEASDRRIV DQRLSSHGAH MGRGNDHMGT DGLGQVAVPS SQTTIKASSW QLWLPQRGQA 240 GDACAGPQAA EPIQEPDWGA LTQSSGSHGA HVTDSTAGRV SNALGARTSS SPQGVTMEAP 300 PCAVSRMLPE EESLTCGTHV SQLPLAMTQQ ERGQGGEPAG RSGFAFERSG SGGGNPCLMS 360 DLGDASGAVA GTSGSQMCKY WINTGKCHKG AVCRYAHPPE SEDGAVRLAW VASRKQARRQ 420 AAAAGGDPHA ASAASKRHRA RIFADWIVST FGLDFLRSGS GVVDVAGGRG ELAFYLQNVH 480 GIHTTVVDPR PGKLSRKQHR ILASSSLQPA DSAHCSAGSL PLRTPTDESW PASLDPALRA 540 TGGFQAAAHN FQVGRADDQG KVCDRSLSRI AEGPATGEDR FVVGGNGWEG QLPEHLEAEF 600 GMQLWESRHG EALRRCSIVV GLHPDQATDP ILEFALAFGK PFAIIPCCVF ARQFPHRRLR 660 IPPLQSGVPP PDSVPASLPS ALPSTPTETG VQVEVRPSGT GQAQMPSGGA SNTWGTDRDY 720 ASNVLKIELA DGETAVESHA QLVVYLRERG GSEARIHYLP FEGLNQVVFR PPPPRHFNLI 780 P*

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence

MIQCITGQLI YKRALSRRLV FFDLEVHSKC AESHTVELIL KAGEGLTQEE VRDLRDTLKL  60
GDVATAWGHM GRTCSELLVH RISIVSRWKD THPREAFRPR QAHKPAAAAP SHISHGSHMG  120
GVNRIPPAPS SEPCQQVLAE SLSAAAENAR WNLSGRQDAS QSCHGFETIP MGALLLGPSV  180
PHEASDRRIV DQRLSSHGAH MGRGNDHMGT DGLGQVAVPS SQTTIKASSW QLWLPQRGQA  240
GDACAGPQAA EPIQEPDWGA LTQSSGSHGA HVTDSTAGRV SNALGARTSS SPQGVTMEAP  300
PCAVSRMLPE EESLTCGTHV SQLPLAMTQQ ERGQGGEPAG RSGFAFERSG SGGGNPCLMS  360
DLGDASGAVA GTSGSQMCKY WINTGKCHKG AVCRYAHPPE SEDGAVRLAW VASRKQARRQ  420
AAAAGGDPHA ASAASKRHRA RIFADWIVST FGLDFLRSGS GVVDVAGGRG ELAFYLQNVH  480
GIHTTVVDPR PGKLSRKQHR ILASSSLQPA DSAHCSAGSL PLRTPTDESW PASLDPALRA  540
TGGFQAAAHN FQVGRADDQG KVCDRSLSRI AEGPATGEDR FVVGGNGWEG QLPEHLEAEF  600
GMQLWESRHG EALRRCSIVV GLHPDQATDP ILEFALAFGK PFAIIPCCVF ARQFPHRRLR  660
IPPLQSGVPP PDSVPASLPS ALPSTPTETG VQVEVRPSGT GQAQMPSGGA SNTWGTDRDY  720
ASNVLKIELA DGETAVESHA QLVVYLRERG GSEARIHYLP FEGLNQVVFR PPPPRHFNLI  780
P*