PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0066s0052.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

AP2

Protein Properties

Length: 1261aa MW: 129920 Da PI: 5.7306

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0066s0052.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.3	5.2e-10	90	137	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+y+GV+ +k+ grW+A+I +g k+ +lg ++t+ Aa a++a + k Bobra.0066s0052.1.p 90 SQYRGVYKRKRGGRWEASIVI---DG--KNCRLGLHDTEVLAAHAYDAVAIKR 137 78**************766...33..******99******99876 PP
2	AP2	34.9	3.8e-11	414	463	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k++g+Wv++I+ k+++lg + Aa+a+++a+ + g Bobra.0066s0052.1.p 414 SKYRGVSTHKQSGKWVSQIKAG-----GKQIYLGFYKDQLTAAQAYDQAAINVQG 463 89**************9993.....4********************98766 PP
3	AP2	26.1	2.2e-08	512	561	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV dk +++W+A+I g + +++lg + t+ Aa+a+++a ++++g Bobra.0066s0052.1.p 512 SSFRGVAPDK-SKKWRAQITT----GAKHTVYLGLYPTEVAAARAYDRASLAKRG 561 579*9899.7**888....335******99*******998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1261 aa Download sequence
MVHTTPTMES LNVPDREGES VLGIPIDRSD GQPAWNHGTL SEQQFQPQVF PGVPSVDLQT 60 FIPGAYQEQV QLPVDCLPEE HHPPVTTKSS QYRGVYKRKR GGRWEASIVI DGKNCRLGLH 120 DTEVLAAHAY DAVAIKRWGV EEAQNKLNFQ SSMYNLAALN QLTLPQVVEV VRGNTARGRK 180 AAQLPPESAA APSAAVAIDE AEPASKPRPL TGQKRSTPDS QPHSRPKDGG LLLTPQTSPV 240 PPAQLRGPDT PLGHPAVPSA ITSTGQAPGG AAQAAPVFCM AGQPLLFPVQ QQSLGSQAPS 300 RAGQPLLALD PNLVWAGPAS TVPGQVQGLG MAGQATTVPG QVQGLGMAGQ ATTLAGQVQG 360 VGLAGQDPRL PDQASGVMKF LMSTAAAPPP PADAASGAAV PCSGGDRVVC KQSSKYRGVS 420 THKQSGKWVS QIKAGGKQIY LGFYKDQLTA AQAYDQAAIN VQGEKAETNF PLVTYSDRWD 480 YLRSISLHEL VLQLKKGPRG PGEIKQIKVP QSSFRGVAPD KSKKWRAQIT TGAKHTVYLG 540 LYPTEVAAAR AYDRASLAKR GVQSKTNFPA EDYAAELDHL TSAPFSDIVK ELRASAQGTG 600 AAEDDLLPAS EYDLFVDQLG LSTSDGPDPP LAVPQGTSLV RNSLEGPLPM PGSHQAYGAA 660 LASGPPAFYH GQPSPTDPGS NPGALGIASG SMISDPQNNP ACHQQGMNVP NYQSLPVAVP 720 HGYPMAAMPP GLLVQVRSPG DPSHCALRGR ALVPSARDAI DPSVRPGGFS GQVAGPGTLP 780 QGTSGVHRAH VPALPCDSFA LGPPAETSSI SSASPALINP LAGAHIHPRA QAPGSAMVSS 840 AMSVQQQAPW LVEGPGDSRF DVDDPCGLAS RDQTPMFHAQ MGGDSYQQFL LPQDCFAPAS 900 GGRLPHQPLD GALPGGAGAG ALTDEALFSA LPGEAVLGVL HEQAGPATTP GQGLQLAMPD 960 QADLRTSPGA VPGPTPTVPM LPGAAAYGGR GTPFGSHEGV APGAETGQPQ TPTAETVSAP 1020 GVAQAHDGAY YTDLVMLGSG GEDTGAGSVK GEAEGPNSEV ALLGYGFAEE LAGACGPARK 1080 LPEVLFPGED PQFCSSPSAP ELLHLNRSER DLPGALLLEE RQGSPLESFR STPGGAAVRS 1140 EERQGSPLVS FRSSPGGAAA RLRERQGSTP TALGGALAAE EQYTSGISPT LPPQPADADA 1200 SGMLLFPGSS SKDDSLPTSP LFNRNPSGSP PLLGVLEGAG MSDSPHLQGS APGKLFLDGA 1260 *

Sequence ? help Back to Top

Protein Sequence Length: 1261 aa Download sequence

MVHTTPTMES LNVPDREGES VLGIPIDRSD GQPAWNHGTL SEQQFQPQVF PGVPSVDLQT  60
FIPGAYQEQV QLPVDCLPEE HHPPVTTKSS QYRGVYKRKR GGRWEASIVI DGKNCRLGLH  120
DTEVLAAHAY DAVAIKRWGV EEAQNKLNFQ SSMYNLAALN QLTLPQVVEV VRGNTARGRK  180
AAQLPPESAA APSAAVAIDE AEPASKPRPL TGQKRSTPDS QPHSRPKDGG LLLTPQTSPV  240
PPAQLRGPDT PLGHPAVPSA ITSTGQAPGG AAQAAPVFCM AGQPLLFPVQ QQSLGSQAPS  300
RAGQPLLALD PNLVWAGPAS TVPGQVQGLG MAGQATTVPG QVQGLGMAGQ ATTLAGQVQG  360
VGLAGQDPRL PDQASGVMKF LMSTAAAPPP PADAASGAAV PCSGGDRVVC KQSSKYRGVS  420
THKQSGKWVS QIKAGGKQIY LGFYKDQLTA AQAYDQAAIN VQGEKAETNF PLVTYSDRWD  480
YLRSISLHEL VLQLKKGPRG PGEIKQIKVP QSSFRGVAPD KSKKWRAQIT TGAKHTVYLG  540
LYPTEVAAAR AYDRASLAKR GVQSKTNFPA EDYAAELDHL TSAPFSDIVK ELRASAQGTG  600
AAEDDLLPAS EYDLFVDQLG LSTSDGPDPP LAVPQGTSLV RNSLEGPLPM PGSHQAYGAA  660
LASGPPAFYH GQPSPTDPGS NPGALGIASG SMISDPQNNP ACHQQGMNVP NYQSLPVAVP  720
HGYPMAAMPP GLLVQVRSPG DPSHCALRGR ALVPSARDAI DPSVRPGGFS GQVAGPGTLP  780
QGTSGVHRAH VPALPCDSFA LGPPAETSSI SSASPALINP LAGAHIHPRA QAPGSAMVSS  840
AMSVQQQAPW LVEGPGDSRF DVDDPCGLAS RDQTPMFHAQ MGGDSYQQFL LPQDCFAPAS  900
GGRLPHQPLD GALPGGAGAG ALTDEALFSA LPGEAVLGVL HEQAGPATTP GQGLQLAMPD  960
QADLRTSPGA VPGPTPTVPM LPGAAAYGGR GTPFGSHEGV APGAETGQPQ TPTAETVSAP  1020
GVAQAHDGAY YTDLVMLGSG GEDTGAGSVK GEAEGPNSEV ALLGYGFAEE LAGACGPARK  1080
LPEVLFPGED PQFCSSPSAP ELLHLNRSER DLPGALLLEE RQGSPLESFR STPGGAAVRS  1140
EERQGSPLVS FRSSPGGAAA RLRERQGSTP TALGGALAAE EQYTSGISPT LPPQPADADA  1200
SGMLLFPGSS SKDDSLPTSP LFNRNPSGSP PLLGVLEGAG MSDSPHLQGS APGKLFLDGA  1260
*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-16	AP2 family protein