PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0056s0082.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 679aa MW: 72138.6 Da PI: 9.9653

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0056s0082.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.2	8.1e-13	85	128	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g W++eEd +l +av ++G g+W++ +++ gR +kq+++rw+ Bobra.0056s0082.1.p 85 KGGWSAEEDARLQQAVMEHGEGCWSRLVPMFP-GRIGKQLRERWN 128 688***************************.*********8 PP
2	Myb_DNA-binding	51.4	2.4e-16	137	179	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+teE+ +lv++++++G+ W+ Ia+ ++ gRt + +k++w+ Bobra.0056s0082.1.p 137 KEAWSTEEENKLVELHRKMGNC-WADIAKDLP-GRTCNAVKNHWN 179 579***************99.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MSSDAAPDSP RHPSEVLKDD AKQASGACTD TVAGRSSEPD VPLSGVCSDN PAGNPRKRSA 60 SATTYLPGLT KSGKRRRKHP VAEVKGGWSA EEDARLQQAV MEHGEGCWSR LVPMFPGRIG 120 KQLRERWNHE LRPDINKEAW STEEENKLVE LHRKMGNCWA DIAKDLPGRT CNAVKNHWNA 180 TFRRTCRSVT KVPKTPLEKY MLSPERKFLF GKRKGHGGGR PRKAEGNKAD EGKGEGIKGE 240 GNTGSCSQPE SEEQAADASD ETAVHLASNL RPASRRKKSP PKRFVSPPRG KARGRGAQRT 300 RAEEVEMDNV VAALLSLDSS PRNKRRMKRQ APATPTPRVA SARKVPTTRI RDRTKESSKA 360 LSPGPEAVRS SPEASEECAP APVKPEAAPA EVQSPAEQPQ PPPKAPVQAF DFSAIPYGAL 420 YVQAPWLACP PVPGGFLLQP APGLGLPWYP AAGTHGTAEG FVGIPMLNPA GLPSHNPVQL 480 VAAPQPSGIK QPKASTAMGE CVGPSILDLA PSMAKASCGA GALFGMATAE AKSEGSARSS 540 SDPPPPRARG RAQGEDPSGT VARFRDATAR KQPKARDLPR ACVSSADLGG QLERLARGCE 600 EALHSCPQPA ALLAQLQANP PPSLDLLSRF VAMASPEEPS LAKGLGPMLR LFGEQLMTLA 660 QAVRATSDDP TTTGTQEP*

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MSSDAAPDSP RHPSEVLKDD AKQASGACTD TVAGRSSEPD VPLSGVCSDN PAGNPRKRSA  60
SATTYLPGLT KSGKRRRKHP VAEVKGGWSA EEDARLQQAV MEHGEGCWSR LVPMFPGRIG  120
KQLRERWNHE LRPDINKEAW STEEENKLVE LHRKMGNCWA DIAKDLPGRT CNAVKNHWNA  180
TFRRTCRSVT KVPKTPLEKY MLSPERKFLF GKRKGHGGGR PRKAEGNKAD EGKGEGIKGE  240
GNTGSCSQPE SEEQAADASD ETAVHLASNL RPASRRKKSP PKRFVSPPRG KARGRGAQRT  300
RAEEVEMDNV VAALLSLDSS PRNKRRMKRQ APATPTPRVA SARKVPTTRI RDRTKESSKA  360
LSPGPEAVRS SPEASEECAP APVKPEAAPA EVQSPAEQPQ PPPKAPVQAF DFSAIPYGAL  420
YVQAPWLACP PVPGGFLLQP APGLGLPWYP AAGTHGTAEG FVGIPMLNPA GLPSHNPVQL  480
VAAPQPSGIK QPKASTAMGE CVGPSILDLA PSMAKASCGA GALFGMATAE AKSEGSARSS  540
SDPPPPRARG RAQGEDPSGT VARFRDATAR KQPKARDLPR ACVSSADLGG QLERLARGCE  600
EALHSCPQPA ALLAQLQANP PPSLDLLSRF VAMASPEEPS LAKGLGPMLR LFGEQLMTLA  660
QAVRATSDDP TTTGTQEP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	78	RKRSASATTYLPGLTKSGKRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	7e-36	MYB family protein