PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0046s0021.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

CPP

Protein Properties

Length: 568aa MW: 60045.2 Da PI: 8.3547

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0046s0021.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.9	4.8e-14	128	165	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 kk+CnCk skClk+YCeCfa+gk+C++ C+C +C+N +e Bobra.0046s0021.1.p 128 KKHCNCKASKCLKLYCECFASGKYCDS-CNCVQCNNIKE 165 79***********************.******876 PP
2	TCR	52.7	8.2e-17	199	238	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++kgCnCkks+ClkkYCeCf+ag +C+ +CkC++CkN e Bobra.0046s0021.1.p 199 RHNKGCNCKKSNCLKKYCECFQAGIFCATTCKCQECKNYE 238 589***********************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MNSSARLADD EQAERAPSTT ASREPYQFQN GAALSVSTTS AFTALNPTNP PPGHSDQGHL 60 YQGPGSGAPP MQPKTGRPGL LSPANQTTSL HPTLQQTVAP SVTTGSRQRS AAPAARRLNT 120 GVSSAQVKKH CNCKASKCLK LYCECFASGK YCDSCNCVQC NNIKEYDDLR SSAMNTILER 180 NPNAFRPKIH GGLEDDSCRH NKGCNCKKSN CLKKYCECFQ AGIFCATTCK CQECKNYEGS 240 DAREVVLRVG ASVAAAAMKR AESSGLTAQD MLDARQIANT GGTGVTVSTG TPSPHQPEKR 300 RRLNAPPVVS SSQAAVATMQ STVPVGLPAA AQVQQTPTIA QGPVAVPAYQ AAVPGAEFQP 360 AISDHKCRLK NGLLSMLHGQ HGLEGLVTVL LNAVERGTHD AANTNFGQGE QLYSQQHEQK 420 ERRLLHEDLK LLMKAWDSIQ ATMATHGPSF NAMYQQATQP HYGNGQVQQY SAGHDVAPVD 480 QSVMHYLQRA TQQNGQQSNG HLQMPQQNGQ GALFAPPPVQ IGAPPAQNAL QPHGPHGHAK 540 PGPPSSGVLA ACNPTDGCAN GYACGSS*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MNSSARLADD EQAERAPSTT ASREPYQFQN GAALSVSTTS AFTALNPTNP PPGHSDQGHL  60
YQGPGSGAPP MQPKTGRPGL LSPANQTTSL HPTLQQTVAP SVTTGSRQRS AAPAARRLNT  120
GVSSAQVKKH CNCKASKCLK LYCECFASGK YCDSCNCVQC NNIKEYDDLR SSAMNTILER  180
NPNAFRPKIH GGLEDDSCRH NKGCNCKKSN CLKKYCECFQ AGIFCATTCK CQECKNYEGS  240
DAREVVLRVG ASVAAAAMKR AESSGLTAQD MLDARQIANT GGTGVTVSTG TPSPHQPEKR  300
RRLNAPPVVS SSQAAVATMQ STVPVGLPAA AQVQQTPTIA QGPVAVPAYQ AAVPGAEFQP  360
AISDHKCRLK NGLLSMLHGQ HGLEGLVTVL LNAVERGTHD AANTNFGQGE QLYSQQHEQK  420
ERRLLHEDLK LLMKAWDSIQ ATMATHGPSF NAMYQQATQP HYGNGQVQQY SAGHDVAPVD  480
QSVMHYLQRA TQQNGQQSNG HLQMPQQNGQ GALFAPPPVQ IGAPPAQNAL QPHGPHGHAK  540
PGPPSSGVLA ACNPTDGCAN GYACGSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	303	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.1	2e-48	CPP family protein