PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA66891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19248.1 Da PI: 6.665 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.5 | 2.3e-43 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+C++dC++ap fp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+ slvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la++++ PKA66891.1 6 PCASCKLLRRRCTADCIFAPFFPSDDPQKFAIVHKVFGASNVSKMLQELPVHQRSDAVGSLVYEANARMRDPVYGCVGAISYLQNQVSHLQMQLAVAQA 104 7**********************************************************************************************9998 PP DUF260 100 e 100 e PKA66891.1 105 E 105 7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence |
MGGNSPCASC KLLRRRCTAD CIFAPFFPSD DPQKFAIVHK VFGASNVSKM LQELPVHQRS 60 DAVGSLVYEA NARMRDPVYG CVGAISYLQN QVSHLQMQLA VAQAEILCIQ MQQEQPIIPH 120 DHHLLHQHEH QLDPAAASLD EDSLLHPIPQ LMNFASSSNI VGKEPLKRES LWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-72 | LBD family protein |