PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66844.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Protein Properties

Length: 882aa MW: 96673.2 Da PI: 6.9691

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.6	2.3e-18	367	466	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++lv++ PKA66844.1 367 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGKLVMG 463 99************************555566778***********99899999999.*******************987.77777776 PP EE- CS B3 96 vfr 98 ++ PKA66844.1 464 YRK 466 665 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MSMKRCMNAG CGGAAAVGGA WRKGWMLRSG TFATLCDKCG VEYEQLAFCD KFHQNESGWR 60 ECAFCGKRLH CGCIASKSFL DLLDGGGVQC FSCLNNSRNS LTPSDIIQDL LPQSSQKFHA 120 LSARCYTDER MIVFSALHAD GSSVVPTSYS PNNMNDDVTA NGKFMQLGRN FEVNGDSTVV 180 PAQGGCSNGS FGHVKQEQIA LHIGELGHPN CSGQDQGLLG LLQVSNQIDT KNALKDTPSN 240 PLAQACLSMN LGGSNMGSIM EASSKAGAWQ IAPLHHGVVD DRKEQNKTLI TLQHVQRARH 300 LLPKLPNASH GATSEPPKEL IPQMRIARPP AEGRGRNQLL PRYWPRITDQ ELQQISGDSN 360 STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLKIQDAK GKEWHFQFRF 420 WPNNNSRMYV LEGVTPCIQS LQLQAGDTVT FSRIDPEGKL VMGYRKATNT VALQDSQISA 480 IANGALSCEA LYSGVNENLS LTDKHGSWTN EGLPQTLLVP DKRSRNIGST SKRLLMDSDD 540 AMELKLTWEE AQDLFRPPPR VKPSIVIIED QEFEEYEEPP VFGKRTFFTV QASGVQDQWI 600 QCDDCFRWRR IPVEFLPPSK WACADNTWDS NRSSCAVPDE LTSRELQVLL LQHADTKRRR 660 IATSSKSRPS DIESTGLDAL ANAAVLGDSG TQAPPFAAAT TTRHPRHRPG CTCIVCIQPP 720 SGKGPKHSPA CTCNVCMTVK RRFKTFMMRK KKRQSECEVS ELSKKLPWNS TEEPEMKQNE 780 PEIMDDIDLN CQPQREAVDQ TAATSSSSSP QVTLSSMTSL VQVAGLPLEN YLKQSRIASL 840 TGIEQQHVSS SSPTVLQASL ESETGGDDQQ CGSDKVRSDG AA

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MSMKRCMNAG CGGAAAVGGA WRKGWMLRSG TFATLCDKCG VEYEQLAFCD KFHQNESGWR  60
ECAFCGKRLH CGCIASKSFL DLLDGGGVQC FSCLNNSRNS LTPSDIIQDL LPQSSQKFHA  120
LSARCYTDER MIVFSALHAD GSSVVPTSYS PNNMNDDVTA NGKFMQLGRN FEVNGDSTVV  180
PAQGGCSNGS FGHVKQEQIA LHIGELGHPN CSGQDQGLLG LLQVSNQIDT KNALKDTPSN  240
PLAQACLSMN LGGSNMGSIM EASSKAGAWQ IAPLHHGVVD DRKEQNKTLI TLQHVQRARH  300
LLPKLPNASH GATSEPPKEL IPQMRIARPP AEGRGRNQLL PRYWPRITDQ ELQQISGDSN  360
STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLKIQDAK GKEWHFQFRF  420
WPNNNSRMYV LEGVTPCIQS LQLQAGDTVT FSRIDPEGKL VMGYRKATNT VALQDSQISA  480
IANGALSCEA LYSGVNENLS LTDKHGSWTN EGLPQTLLVP DKRSRNIGST SKRLLMDSDD  540
AMELKLTWEE AQDLFRPPPR VKPSIVIIED QEFEEYEEPP VFGKRTFFTV QASGVQDQWI  600
QCDDCFRWRR IPVEFLPPSK WACADNTWDS NRSSCAVPDE LTSRELQVLL LQHADTKRRR  660
IATSSKSRPS DIESTGLDAL ANAAVLGDSG TQAPPFAAAT TTRHPRHRPG CTCIVCIQPP  720
SGKGPKHSPA CTCNVCMTVK RRFKTFMMRK KKRQSECEVS ELSKKLPWNS TEEPEMKQNE  780
PEIMDDIDLN CQPQREAVDQ TAATSSSSSP QVTLSSMTSL VQVAGLPLEN YLKQSRIASL  840
TGIEQQHVSS SSPTVLQASL ESETGGDDQQ CGSDKVRSDG AA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	657	661	KRRRI
2	740	751	KRRFKTFMMRKK
3	740	753	KRRFKTFMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-175	B3 family protein