PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA66672.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ERF

Protein Properties

Length: 612aa MW: 64123.5 Da PI: 5.5249

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA66672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.9	6.7e-15	309	360	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PKA66672.1 309 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 360 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MSAMNNWLGF SLSPQDLRTS QPPQPASIFP GEEADLAGAA IQTLRPDGSF GIFEALNRNP 60 HAPHDWSTRG FDFKANSSEL SILVDSSGGS GGGGGGDMEE DEPKLEDFLG GHSFLDHDQK 120 MAGSIAGDRY VYSGCNPSFQ LPSSSSTIGL SMIKTWLRSQ PAPAGQPVET RVGDDAAAGP 180 SSQSLLLSMS TGSQSGSALP LMAAESSSPE NKEKDAASAE LDAQSGSIEA VPRKSIDTFG 240 QRTSIYRGVT SVKFGSLWSS LCLLPEGLLS LTVDLTDLWA GGYDKEEKAA RAYDLAALKK 300 SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG 360 LNAVTNFDMS RYDVRSILES TSLPIGSGAK RHKDAADHAE SSIDARRTDG AASSSVISPH 420 FDGSYSPSHH HHGWPAIAFS HPGQQFGLHY PYGGPGNSGS PAGQLRGWCK QEPDTTIAGV 480 STDIQQLQVN GGAHNFFQQP PPAAVNNFVN MESSSVEPYS GYLMPMSTMM VDHAVGGSGG 540 GGGGSGGGGG GGGGYGGNDV KSGFGFESML PAGSDPYGVS GSWIGNPVQA IVQRSGSHEA 600 PLFTVWNDAR ST

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MSAMNNWLGF SLSPQDLRTS QPPQPASIFP GEEADLAGAA IQTLRPDGSF GIFEALNRNP  60
HAPHDWSTRG FDFKANSSEL SILVDSSGGS GGGGGGDMEE DEPKLEDFLG GHSFLDHDQK  120
MAGSIAGDRY VYSGCNPSFQ LPSSSSTIGL SMIKTWLRSQ PAPAGQPVET RVGDDAAAGP  180
SSQSLLLSMS TGSQSGSALP LMAAESSSPE NKEKDAASAE LDAQSGSIEA VPRKSIDTFG  240
QRTSIYRGVT SVKFGSLWSS LCLLPEGLLS LTVDLTDLWA GGYDKEEKAA RAYDLAALKK  300
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG  360
LNAVTNFDMS RYDVRSILES TSLPIGSGAK RHKDAADHAE SSIDARRTDG AASSSVISPH  420
FDGSYSPSHH HHGWPAIAFS HPGQQFGLHY PYGGPGNSGS PAGQLRGWCK QEPDTTIAGV  480
STDIQQLQVN GGAHNFFQQP PPAAVNNFVN MESSSVEPYS GYLMPMSTMM VDHAVGGSGG  540
GGGGSGGGGG GGGGYGGNDV KSGFGFESML PAGSDPYGVS GSWIGNPVQA IVQRSGSHEA  600
PLFTVWNDAR ST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	2e-71	AP2 family protein